Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2184 and Shewana3_2185 are separated by 332 nucleotides Shewana3_2185 and Shewana3_2186 overlap by 2 nucleotides Shewana3_2186 and Shewana3_2187 are separated by 23 nucleotides
Shewana3_2184: Shewana3_2184 - hypothetical protein (RefSeq), at 2,622,334 to 2,623,602
_2184
Shewana3_2185: Shewana3_2185 - no description, at 2,623,935 to 2,624,186
_2185
Shewana3_2186: Shewana3_2186 - Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit-like protein (RefSeq), at 2,624,185 to 2,624,715
_2186
Shewana3_2187: Shewana3_2187 - hypothetical protein (RefSeq), at 2,624,739 to 2,626,139
_2187
Position (kb)
2624
2625 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2623.233 kb on - strand, within Shewana3_2184 at 2623.466 kb on + strand, within Shewana3_2184 at 2623.661 kb on + strand at 2623.669 kb on - strand at 2623.909 kb on - strand at 2623.953 kb on + strand at 2624.045 kb on - strand, within Shewana3_2185 at 2624.397 kb on - strand, within Shewana3_2186 at 2624.405 kb on - strand, within Shewana3_2186 at 2624.456 kb on - strand, within Shewana3_2186 at 2624.571 kb on - strand, within Shewana3_2186 at 2624.818 kb on + strand at 2624.818 kb on + strand at 2624.821 kb on - strand at 2624.826 kb on - strand at 2624.826 kb on - strand at 2624.826 kb on - strand at 2624.927 kb on - strand, within Shewana3_2187 at 2624.943 kb on - strand, within Shewana3_2187 at 2625.136 kb on + strand, within Shewana3_2187 at 2625.136 kb on + strand, within Shewana3_2187 at 2625.315 kb on + strand, within Shewana3_2187 at 2625.367 kb on + strand, within Shewana3_2187 at 2625.367 kb on + strand, within Shewana3_2187 at 2625.375 kb on - strand, within Shewana3_2187 at 2625.644 kb on - strand, within Shewana3_2187
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,623,233 - Shewana3_2184 0.71 -1.2 2,623,466 + Shewana3_2184 0.89 +0.0 2,623,661 + +0.0 2,623,669 - +0.3 2,623,909 - -0.5 2,623,953 + -1.4 2,624,045 - Shewana3_2185 0.44 -0.8 2,624,397 - Shewana3_2186 0.40 +0.5 2,624,405 - Shewana3_2186 0.41 -0.2 2,624,456 - Shewana3_2186 0.51 +0.4 2,624,571 - Shewana3_2186 0.73 +1.2 2,624,818 + +0.1 2,624,818 + -2.6 2,624,821 - -0.0 2,624,826 - +0.5 2,624,826 - +0.4 2,624,826 - +0.7 2,624,927 - Shewana3_2187 0.13 -1.2 2,624,943 - Shewana3_2187 0.15 -0.2 2,625,136 + Shewana3_2187 0.28 +0.1 2,625,136 + Shewana3_2187 0.28 -2.8 2,625,315 + Shewana3_2187 0.41 -0.2 2,625,367 + Shewana3_2187 0.45 +0.9 2,625,367 + Shewana3_2187 0.45 -0.3 2,625,375 - Shewana3_2187 0.45 -0.4 2,625,644 - Shewana3_2187 0.65 -0.1
Or see this region's nucleotide sequence