Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1846 and Shewana3_1847 are separated by 690 nucleotides Shewana3_1847 and Shewana3_1848 are separated by 44 nucleotides Shewana3_1848 and Shewana3_1849 overlap by 19 nucleotides
Shewana3_1846: Shewana3_1846 - aromatic amino acid transporter (RefSeq), at 2,187,474 to 2,188,661
_1846
Shewana3_1847: Shewana3_1847 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (RefSeq), at 2,189,352 to 2,190,011
_1847
Shewana3_1848: Shewana3_1848 - imidazole glycerol phosphate synthase subunit HisF (RefSeq), at 2,190,056 to 2,190,829
_1848
Shewana3_1849: Shewana3_1849 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq), at 2,190,811 to 2,191,548
_1849
Position (kb)
2189
2190
2191 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 2188.523 kb on - strand, within Shewana3_1846 at 2188.736 kb on - strand at 2188.903 kb on + strand at 2188.953 kb on - strand at 2189.292 kb on + strand at 2189.292 kb on + strand at 2189.332 kb on - strand at 2189.337 kb on - strand at 2189.337 kb on - strand at 2189.339 kb on - strand at 2189.575 kb on + strand, within Shewana3_1847 at 2189.640 kb on + strand, within Shewana3_1847 at 2189.642 kb on + strand, within Shewana3_1847 at 2189.996 kb on - strand at 2190.055 kb on - strand at 2190.406 kb on + strand, within Shewana3_1848 at 2190.633 kb on + strand, within Shewana3_1848 at 2190.634 kb on + strand, within Shewana3_1848 at 2190.641 kb on - strand, within Shewana3_1848 at 2190.778 kb on - strand at 2190.826 kb on + strand at 2190.981 kb on + strand, within Shewana3_1849 at 2190.989 kb on - strand, within Shewana3_1849
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,188,523 - Shewana3_1846 0.88 +0.5 2,188,736 - -0.8 2,188,903 + +0.5 2,188,953 - -0.9 2,189,292 + -1.7 2,189,292 + +2.0 2,189,332 - +0.1 2,189,337 - +0.7 2,189,337 - -1.5 2,189,339 - +0.2 2,189,575 + Shewana3_1847 0.34 -3.9 2,189,640 + Shewana3_1847 0.44 -5.8 2,189,642 + Shewana3_1847 0.44 -4.8 2,189,996 - -6.4 2,190,055 - +2.2 2,190,406 + Shewana3_1848 0.45 -7.1 2,190,633 + Shewana3_1848 0.75 -4.8 2,190,634 + Shewana3_1848 0.75 -4.3 2,190,641 - Shewana3_1848 0.76 -5.5 2,190,778 - -4.8 2,190,826 + -4.6 2,190,981 + Shewana3_1849 0.23 -5.9 2,190,989 - Shewana3_1849 0.24 -4.5
Or see this region's nucleotide sequence