Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1575 and Shewana3_1576 are separated by 162 nucleotides Shewana3_1576 and Shewana3_1577 overlap by 1 nucleotides Shewana3_1577 and Shewana3_1578 are separated by 142 nucleotides
Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393
_1575
Shewana3_1576: Shewana3_1576 - cyclic nucleotide-binding protein (RefSeq), at 1,844,556 to 1,846,418
_1576
Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104
_1577
Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672
_1578
Position (kb)
1844
1845
1846
1847 Strain fitness (log2 ratio)
-2
-1
0
1 at 1843.589 kb on + strand, within Shewana3_1575 at 1843.820 kb on + strand, within Shewana3_1575 at 1843.964 kb on - strand, within Shewana3_1575 at 1844.009 kb on + strand, within Shewana3_1575 at 1844.271 kb on + strand at 1844.410 kb on - strand at 1845.006 kb on - strand, within Shewana3_1576 at 1845.016 kb on - strand, within Shewana3_1576 at 1845.379 kb on + strand, within Shewana3_1576 at 1845.714 kb on + strand, within Shewana3_1576 at 1845.727 kb on - strand, within Shewana3_1576 at 1845.729 kb on - strand, within Shewana3_1576 at 1845.738 kb on + strand, within Shewana3_1576 at 1845.738 kb on + strand, within Shewana3_1576 at 1845.933 kb on + strand, within Shewana3_1576 at 1845.938 kb on + strand, within Shewana3_1576 at 1846.296 kb on - strand at 1846.437 kb on + strand at 1846.437 kb on + strand at 1846.501 kb on - strand, within Shewana3_1577 at 1846.570 kb on + strand, within Shewana3_1577 at 1846.605 kb on + strand, within Shewana3_1577 at 1846.677 kb on + strand, within Shewana3_1577 at 1846.677 kb on + strand, within Shewana3_1577 at 1846.685 kb on - strand, within Shewana3_1577 at 1846.865 kb on - strand, within Shewana3_1577 at 1846.938 kb on + strand, within Shewana3_1577 at 1846.944 kb on + strand, within Shewana3_1577 at 1846.946 kb on - strand, within Shewana3_1577 at 1847.067 kb on + strand at 1847.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,843,589 + Shewana3_1575 0.54 -1.9 1,843,820 + Shewana3_1575 0.67 -1.2 1,843,964 - Shewana3_1575 0.75 -1.9 1,844,009 + Shewana3_1575 0.78 -2.2 1,844,271 + -1.3 1,844,410 - -1.5 1,845,006 - Shewana3_1576 0.24 +0.3 1,845,016 - Shewana3_1576 0.25 -0.1 1,845,379 + Shewana3_1576 0.44 -0.0 1,845,714 + Shewana3_1576 0.62 +0.5 1,845,727 - Shewana3_1576 0.63 -0.2 1,845,729 - Shewana3_1576 0.63 -0.9 1,845,738 + Shewana3_1576 0.63 +0.1 1,845,738 + Shewana3_1576 0.63 +0.8 1,845,933 + Shewana3_1576 0.74 +0.3 1,845,938 + Shewana3_1576 0.74 +1.3 1,846,296 - -1.5 1,846,437 + -0.7 1,846,437 + -0.4 1,846,501 - Shewana3_1577 0.12 -0.9 1,846,570 + Shewana3_1577 0.22 -0.3 1,846,605 + Shewana3_1577 0.27 -1.0 1,846,677 + Shewana3_1577 0.38 -1.6 1,846,677 + Shewana3_1577 0.38 -0.4 1,846,685 - Shewana3_1577 0.39 -1.6 1,846,865 - Shewana3_1577 0.65 -1.7 1,846,938 + Shewana3_1577 0.76 +0.4 1,846,944 + Shewana3_1577 0.77 +0.1 1,846,946 - Shewana3_1577 0.77 +0.5 1,847,067 + +1.0 1,847,075 - -2.1
Or see this region's nucleotide sequence