Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1576

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1575 and Shewana3_1576 are separated by 162 nucleotidesShewana3_1576 and Shewana3_1577 overlap by 1 nucleotidesShewana3_1577 and Shewana3_1578 are separated by 142 nucleotides Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393 _1575 Shewana3_1576: Shewana3_1576 - cyclic nucleotide-binding protein (RefSeq), at 1,844,556 to 1,846,418 _1576 Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104 _1577 Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672 _1578 Position (kb) 1844 1845 1846 1847Strain fitness (log2 ratio) -2 -1 0 1at 1843.589 kb on + strand, within Shewana3_1575at 1843.820 kb on + strand, within Shewana3_1575at 1843.964 kb on - strand, within Shewana3_1575at 1844.009 kb on + strand, within Shewana3_1575at 1844.271 kb on + strandat 1844.410 kb on - strandat 1845.006 kb on - strand, within Shewana3_1576at 1845.016 kb on - strand, within Shewana3_1576at 1845.379 kb on + strand, within Shewana3_1576at 1845.714 kb on + strand, within Shewana3_1576at 1845.727 kb on - strand, within Shewana3_1576at 1845.729 kb on - strand, within Shewana3_1576at 1845.738 kb on + strand, within Shewana3_1576at 1845.738 kb on + strand, within Shewana3_1576at 1845.933 kb on + strand, within Shewana3_1576at 1845.938 kb on + strand, within Shewana3_1576at 1846.296 kb on - strandat 1846.437 kb on + strandat 1846.437 kb on + strandat 1846.501 kb on - strand, within Shewana3_1577at 1846.570 kb on + strand, within Shewana3_1577at 1846.605 kb on + strand, within Shewana3_1577at 1846.677 kb on + strand, within Shewana3_1577at 1846.677 kb on + strand, within Shewana3_1577at 1846.685 kb on - strand, within Shewana3_1577at 1846.865 kb on - strand, within Shewana3_1577at 1846.938 kb on + strand, within Shewana3_1577at 1846.944 kb on + strand, within Shewana3_1577at 1846.946 kb on - strand, within Shewana3_1577at 1847.067 kb on + strandat 1847.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,843,589 + Shewana3_1575 0.54 -1.9
1,843,820 + Shewana3_1575 0.67 -1.2
1,843,964 - Shewana3_1575 0.75 -1.9
1,844,009 + Shewana3_1575 0.78 -2.2
1,844,271 + -1.3
1,844,410 - -1.5
1,845,006 - Shewana3_1576 0.24 +0.3
1,845,016 - Shewana3_1576 0.25 -0.1
1,845,379 + Shewana3_1576 0.44 -0.0
1,845,714 + Shewana3_1576 0.62 +0.5
1,845,727 - Shewana3_1576 0.63 -0.2
1,845,729 - Shewana3_1576 0.63 -0.9
1,845,738 + Shewana3_1576 0.63 +0.1
1,845,738 + Shewana3_1576 0.63 +0.8
1,845,933 + Shewana3_1576 0.74 +0.3
1,845,938 + Shewana3_1576 0.74 +1.3
1,846,296 - -1.5
1,846,437 + -0.7
1,846,437 + -0.4
1,846,501 - Shewana3_1577 0.12 -0.9
1,846,570 + Shewana3_1577 0.22 -0.3
1,846,605 + Shewana3_1577 0.27 -1.0
1,846,677 + Shewana3_1577 0.38 -1.6
1,846,677 + Shewana3_1577 0.38 -0.4
1,846,685 - Shewana3_1577 0.39 -1.6
1,846,865 - Shewana3_1577 0.65 -1.7
1,846,938 + Shewana3_1577 0.76 +0.4
1,846,944 + Shewana3_1577 0.77 +0.1
1,846,946 - Shewana3_1577 0.77 +0.5
1,847,067 + +1.0
1,847,075 - -2.1

Or see this region's nucleotide sequence