Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1572

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1571 and Shewana3_1572 are separated by 56 nucleotidesShewana3_1572 and Shewana3_1573 are separated by 100 nucleotides Shewana3_1571: Shewana3_1571 - metal dependent phosphohydrolase (RefSeq), at 1,838,793 to 1,839,998 _1571 Shewana3_1572: Shewana3_1572 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,840,055 to 1,840,912 _1572 Shewana3_1573: Shewana3_1573 - DSBA oxidoreductase (RefSeq), at 1,841,013 to 1,841,666 _1573 Position (kb) 1840 1841Strain fitness (log2 ratio) -1 0 1at 1839.103 kb on + strand, within Shewana3_1571at 1839.103 kb on + strand, within Shewana3_1571at 1839.103 kb on + strand, within Shewana3_1571at 1839.115 kb on + strand, within Shewana3_1571at 1839.123 kb on + strand, within Shewana3_1571at 1839.267 kb on + strand, within Shewana3_1571at 1839.864 kb on + strand, within Shewana3_1571at 1840.380 kb on + strand, within Shewana3_1572at 1840.426 kb on + strand, within Shewana3_1572at 1840.697 kb on + strand, within Shewana3_1572at 1841.193 kb on - strand, within Shewana3_1573at 1841.605 kb on + strandat 1841.613 kb on - strandat 1841.620 kb on + strandat 1841.682 kb on + strandat 1841.682 kb on + strandat 1841.682 kb on + strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1841.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,839,103 + Shewana3_1571 0.26 +0.3
1,839,103 + Shewana3_1571 0.26 +0.2
1,839,103 + Shewana3_1571 0.26 -1.5
1,839,115 + Shewana3_1571 0.27 +0.9
1,839,123 + Shewana3_1571 0.27 +0.6
1,839,267 + Shewana3_1571 0.39 -0.1
1,839,864 + Shewana3_1571 0.89 +0.6
1,840,380 + Shewana3_1572 0.38 +0.5
1,840,426 + Shewana3_1572 0.43 +0.5
1,840,697 + Shewana3_1572 0.75 +0.4
1,841,193 - Shewana3_1573 0.28 +0.0
1,841,605 + +0.3
1,841,613 - -0.8
1,841,620 + -0.0
1,841,682 + -1.4
1,841,682 + -0.7
1,841,682 + -1.0
1,841,690 - +0.6
1,841,690 - -1.2
1,841,690 - -0.0
1,841,690 - +0.7

Or see this region's nucleotide sequence