Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1065 and Shewana3_1066 are separated by 138 nucleotides Shewana3_1066 and Shewana3_1067 are separated by 86 nucleotides Shewana3_1067 and Shewana3_1068 are separated by 3 nucleotides
Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811
_1065
Shewana3_1066: Shewana3_1066 - sterol-binding domain-containing protein (RefSeq), at 1,251,950 to 1,252,486
_1066
Shewana3_1067: Shewana3_1067 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 1,252,573 to 1,252,824
_1067
Shewana3_1068: Shewana3_1068 - peptidase U32 (RefSeq), at 1,252,828 to 1,254,192
_1068
Position (kb)
1251
1252
1253 Strain fitness (log2 ratio)
-2
-1
0
1 at 1250.959 kb on + strand, within Shewana3_1065 at 1250.972 kb on - strand, within Shewana3_1065 at 1250.976 kb on - strand, within Shewana3_1065 at 1250.978 kb on + strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.129 kb on - strand, within Shewana3_1065 at 1251.202 kb on + strand, within Shewana3_1065 at 1251.210 kb on - strand, within Shewana3_1065 at 1251.284 kb on + strand, within Shewana3_1065 at 1251.389 kb on + strand, within Shewana3_1065 at 1251.397 kb on - strand, within Shewana3_1065 at 1251.458 kb on + strand, within Shewana3_1065 at 1251.852 kb on - strand at 1252.007 kb on - strand, within Shewana3_1066 at 1252.212 kb on + strand, within Shewana3_1066 at 1252.219 kb on + strand, within Shewana3_1066 at 1252.276 kb on + strand, within Shewana3_1066 at 1252.362 kb on - strand, within Shewana3_1066 at 1252.483 kb on - strand at 1252.484 kb on - strand at 1252.825 kb on + strand at 1252.825 kb on + strand at 1252.825 kb on + strand at 1252.825 kb on + strand at 1252.835 kb on + strand at 1252.942 kb on + strand at 1252.943 kb on - strand at 1252.970 kb on - strand, within Shewana3_1068 at 1253.377 kb on + strand, within Shewana3_1068
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,250,959 + Shewana3_1065 0.15 +0.7 1,250,972 - Shewana3_1065 0.16 +0.0 1,250,976 - Shewana3_1065 0.17 -0.2 1,250,978 + Shewana3_1065 0.17 -0.2 1,251,045 - Shewana3_1065 0.23 +0.2 1,251,045 - Shewana3_1065 0.23 -0.2 1,251,045 - Shewana3_1065 0.23 +0.4 1,251,129 - Shewana3_1065 0.32 +0.3 1,251,202 + Shewana3_1065 0.39 +0.2 1,251,210 - Shewana3_1065 0.40 -0.2 1,251,284 + Shewana3_1065 0.47 -0.0 1,251,389 + Shewana3_1065 0.58 -0.3 1,251,397 - Shewana3_1065 0.59 +0.1 1,251,458 + Shewana3_1065 0.65 -0.7 1,251,852 - -0.1 1,252,007 - Shewana3_1066 0.11 -0.5 1,252,212 + Shewana3_1066 0.49 -1.4 1,252,219 + Shewana3_1066 0.50 -1.0 1,252,276 + Shewana3_1066 0.61 +0.1 1,252,362 - Shewana3_1066 0.77 +0.2 1,252,483 - +0.4 1,252,484 - -0.7 1,252,825 + -0.4 1,252,825 + +0.2 1,252,825 + -0.9 1,252,825 + -0.3 1,252,835 + +0.5 1,252,942 + -1.0 1,252,943 - +0.3 1,252,970 - Shewana3_1068 0.10 -0.5 1,253,377 + Shewana3_1068 0.40 -2.3
Or see this region's nucleotide sequence