Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1066

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1065 and Shewana3_1066 are separated by 138 nucleotidesShewana3_1066 and Shewana3_1067 are separated by 86 nucleotidesShewana3_1067 and Shewana3_1068 are separated by 3 nucleotides Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811 _1065 Shewana3_1066: Shewana3_1066 - sterol-binding domain-containing protein (RefSeq), at 1,251,950 to 1,252,486 _1066 Shewana3_1067: Shewana3_1067 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 1,252,573 to 1,252,824 _1067 Shewana3_1068: Shewana3_1068 - peptidase U32 (RefSeq), at 1,252,828 to 1,254,192 _1068 Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -2 -1 0 1at 1250.959 kb on + strand, within Shewana3_1065at 1250.972 kb on - strand, within Shewana3_1065at 1250.976 kb on - strand, within Shewana3_1065at 1250.978 kb on + strand, within Shewana3_1065at 1251.045 kb on - strand, within Shewana3_1065at 1251.045 kb on - strand, within Shewana3_1065at 1251.045 kb on - strand, within Shewana3_1065at 1251.129 kb on - strand, within Shewana3_1065at 1251.202 kb on + strand, within Shewana3_1065at 1251.210 kb on - strand, within Shewana3_1065at 1251.284 kb on + strand, within Shewana3_1065at 1251.389 kb on + strand, within Shewana3_1065at 1251.397 kb on - strand, within Shewana3_1065at 1251.458 kb on + strand, within Shewana3_1065at 1251.852 kb on - strandat 1252.007 kb on - strand, within Shewana3_1066at 1252.212 kb on + strand, within Shewana3_1066at 1252.219 kb on + strand, within Shewana3_1066at 1252.276 kb on + strand, within Shewana3_1066at 1252.362 kb on - strand, within Shewana3_1066at 1252.483 kb on - strandat 1252.484 kb on - strandat 1252.825 kb on + strandat 1252.825 kb on + strandat 1252.825 kb on + strandat 1252.825 kb on + strandat 1252.835 kb on + strandat 1252.942 kb on + strandat 1252.943 kb on - strandat 1252.970 kb on - strand, within Shewana3_1068at 1253.377 kb on + strand, within Shewana3_1068

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,250,959 + Shewana3_1065 0.15 +0.7
1,250,972 - Shewana3_1065 0.16 +0.0
1,250,976 - Shewana3_1065 0.17 -0.2
1,250,978 + Shewana3_1065 0.17 -0.2
1,251,045 - Shewana3_1065 0.23 +0.2
1,251,045 - Shewana3_1065 0.23 -0.2
1,251,045 - Shewana3_1065 0.23 +0.4
1,251,129 - Shewana3_1065 0.32 +0.3
1,251,202 + Shewana3_1065 0.39 +0.2
1,251,210 - Shewana3_1065 0.40 -0.2
1,251,284 + Shewana3_1065 0.47 -0.0
1,251,389 + Shewana3_1065 0.58 -0.3
1,251,397 - Shewana3_1065 0.59 +0.1
1,251,458 + Shewana3_1065 0.65 -0.7
1,251,852 - -0.1
1,252,007 - Shewana3_1066 0.11 -0.5
1,252,212 + Shewana3_1066 0.49 -1.4
1,252,219 + Shewana3_1066 0.50 -1.0
1,252,276 + Shewana3_1066 0.61 +0.1
1,252,362 - Shewana3_1066 0.77 +0.2
1,252,483 - +0.4
1,252,484 - -0.7
1,252,825 + -0.4
1,252,825 + +0.2
1,252,825 + -0.9
1,252,825 + -0.3
1,252,835 + +0.5
1,252,942 + -1.0
1,252,943 - +0.3
1,252,970 - Shewana3_1068 0.10 -0.5
1,253,377 + Shewana3_1068 0.40 -2.3

Or see this region's nucleotide sequence