Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0196

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsL and Shewana3_0195 are separated by 82 nucleotidesShewana3_0195 and Shewana3_0196 are separated by 78 nucleotidesShewana3_0196 and Shewana3_0197 are separated by 71 nucleotides Shewana3_0194: rpsL - 30S ribosomal protein S12 (RefSeq), at 238,603 to 238,977 rpsL Shewana3_0195: Shewana3_0195 - 30S ribosomal protein S7 (RefSeq), at 239,060 to 239,530 _0195 Shewana3_0196: Shewana3_0196 - elongation factor G (RefSeq), at 239,609 to 241,705 _0196 Shewana3_0197: Shewana3_0197 - elongation factor Tu (RefSeq), at 241,777 to 242,961 _0197 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -1 0 1at 241.733 kb on + strandat 241.977 kb on + strand, within Shewana3_0197at 242.019 kb on - strand, within Shewana3_0197

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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241,733 + +0.6
241,977 + Shewana3_0197 0.17 +1.7
242,019 - Shewana3_0197 0.20 +1.6

Or see this region's nucleotide sequence