Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0167

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0165 and Shewana3_0166 overlap by 14 nucleotidesShewana3_0166 and Shewana3_0167 are separated by 234 nucleotidesShewana3_0167 and Shewana3_0168 are separated by 119 nucleotides Shewana3_0165: Shewana3_0165 - hypothetical protein (RefSeq), at 188,999 to 190,165 _0165 Shewana3_0166: Shewana3_0166 - GCN5-related N-acetyltransferase (RefSeq), at 190,152 to 190,640 _0166 Shewana3_0167: Shewana3_0167 - phage tail collar domain-containing protein (RefSeq), at 190,875 to 191,510 _0167 Shewana3_0168: Shewana3_0168 - Ig family protein (RefSeq), at 191,630 to 202,264 _0168 Position (kb) 190 191 192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 189.941 kb on + strand, within Shewana3_0165at 189.950 kb on + strand, within Shewana3_0165at 189.950 kb on + strand, within Shewana3_0165at 189.958 kb on - strand, within Shewana3_0165at 190.005 kb on + strand, within Shewana3_0165at 190.138 kb on - strandat 190.172 kb on - strandat 190.189 kb on + strandat 190.197 kb on - strandat 190.397 kb on + strand, within Shewana3_0166at 190.478 kb on - strand, within Shewana3_0166at 190.562 kb on + strand, within Shewana3_0166at 190.836 kb on + strandat 190.970 kb on + strand, within Shewana3_0167at 191.034 kb on + strand, within Shewana3_0167at 191.053 kb on + strand, within Shewana3_0167at 191.244 kb on - strand, within Shewana3_0167at 191.287 kb on - strand, within Shewana3_0167at 191.365 kb on - strand, within Shewana3_0167at 191.373 kb on + strand, within Shewana3_0167at 191.373 kb on + strand, within Shewana3_0167at 191.378 kb on + strand, within Shewana3_0167at 191.381 kb on - strand, within Shewana3_0167at 191.391 kb on - strand, within Shewana3_0167at 191.407 kb on + strand, within Shewana3_0167at 191.416 kb on - strand, within Shewana3_0167at 191.422 kb on + strand, within Shewana3_0167at 191.613 kb on + strandat 191.613 kb on + strandat 191.613 kb on + strandat 191.613 kb on + strandat 191.621 kb on - strandat 191.621 kb on - strandat 191.621 kb on - strandat 191.634 kb on - strandat 191.649 kb on - strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.762 kb on - strandat 191.892 kb on + strandat 191.899 kb on + strandat 191.942 kb on + strandat 191.979 kb on + strandat 192.047 kb on + strandat 192.093 kb on + strandat 192.117 kb on - strandat 192.242 kb on + strandat 192.268 kb on + strandat 192.304 kb on + strandat 192.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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189,941 + Shewana3_0165 0.81 +0.5
189,950 + Shewana3_0165 0.81 +0.7
189,950 + Shewana3_0165 0.81 -0.6
189,958 - Shewana3_0165 0.82 -0.4
190,005 + Shewana3_0165 0.86 +0.7
190,138 - -0.7
190,172 - -0.7
190,189 + +0.4
190,197 - -1.2
190,397 + Shewana3_0166 0.50 -0.7
190,478 - Shewana3_0166 0.67 +0.7
190,562 + Shewana3_0166 0.84 -1.5
190,836 + -1.2
190,970 + Shewana3_0167 0.15 -0.0
191,034 + Shewana3_0167 0.25 -4.3
191,053 + Shewana3_0167 0.28 +1.2
191,244 - Shewana3_0167 0.58 -0.9
191,287 - Shewana3_0167 0.65 +0.4
191,365 - Shewana3_0167 0.77 -2.2
191,373 + Shewana3_0167 0.78 +0.4
191,373 + Shewana3_0167 0.78 +0.2
191,378 + Shewana3_0167 0.79 +0.3
191,381 - Shewana3_0167 0.80 -0.1
191,391 - Shewana3_0167 0.81 +0.6
191,407 + Shewana3_0167 0.84 -0.4
191,416 - Shewana3_0167 0.85 +0.5
191,422 + Shewana3_0167 0.86 +0.3
191,613 + +0.6
191,613 + -0.1
191,613 + +0.1
191,613 + +0.1
191,621 - +0.8
191,621 - +1.3
191,621 - +0.5
191,634 - +0.3
191,649 - -0.2
191,754 + -0.2
191,754 + +0.3
191,762 - +0.0
191,892 + -1.3
191,899 + -1.3
191,942 + +0.4
191,979 + -1.4
192,047 + +0.1
192,093 + -0.4
192,117 - +0.2
192,242 + -0.2
192,268 + -1.7
192,304 + +0.4
192,463 - +0.3

Or see this region's nucleotide sequence