Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4150

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4149 and Shewana3_4150 are separated by 130 nucleotidesShewana3_4150 and Shewana3_4151 are separated by 375 nucleotidesShewana3_4151 and Shewana3_4152 are separated by 41 nucleotides Shewana3_4149: Shewana3_4149 - IS605 family transposase OrfB (RefSeq), at 10,342 to 11,445 _4149 Shewana3_4150: Shewana3_4150 - hypothetical protein (RefSeq), at 11,576 to 11,842 _4150 Shewana3_4151: Shewana3_4151 - hypothetical protein (RefSeq), at 12,218 to 12,505 _4151 Shewana3_4152: Shewana3_4152 - lipoprotein signal peptidase-like protein (RefSeq), at 12,547 to 12,888 _4152 Position (kb) 11 12Strain fitness (log2 ratio) -1 0 1 2at 11.505 kb on + strandat 11.801 kb on + strand, within Shewana3_4150at 11.806 kb on + strand, within Shewana3_4150at 12.292 kb on - strand, within Shewana3_4151at 12.542 kb on - strandat 12.666 kb on - strand, within Shewana3_4152at 12.717 kb on - strand, within Shewana3_4152

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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11,505 + +2.1
11,801 + Shewana3_4150 0.84 -1.7
11,806 + Shewana3_4150 0.86 -0.1
12,292 - Shewana3_4151 0.26 +1.5
12,542 - +0.8
12,666 - Shewana3_4152 0.35 +0.5
12,717 - Shewana3_4152 0.50 +0.4

Or see this region's nucleotide sequence