Strain Fitness in Shewanella amazonensis SB2B around Sama_0683

Experiment: LB, microplate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0681 and Sama_0682 are separated by 133 nucleotidesSama_0682 and Sama_0683 are separated by 52 nucleotidesSama_0683 and Sama_0684 are separated by 86 nucleotides Sama_0681: Sama_0681 - malate synthase (RefSeq), at 842,929 to 843,501 _0681 Sama_0682: Sama_0682 - putative glutathione S-transferase (RefSeq), at 843,635 to 844,309 _0682 Sama_0683: Sama_0683 - hypothetical protein (RefSeq), at 844,362 to 844,652 _0683 Sama_0684: Sama_0684 - aminopeptidase P, putative (RefSeq), at 844,739 to 846,538 _0684 Position (kb) 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 843.473 kb on - strandat 843.500 kb on - strandat 843.500 kb on - strandat 843.500 kb on - strandat 843.500 kb on - strandat 843.534 kb on - strandat 843.538 kb on - strandat 843.538 kb on - strandat 843.590 kb on + strandat 843.591 kb on - strandat 843.591 kb on - strandat 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.775 kb on - strand, within Sama_0682at 843.775 kb on - strand, within Sama_0682at 843.775 kb on - strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.815 kb on + strand, within Sama_0682at 843.820 kb on + strand, within Sama_0682at 843.820 kb on + strand, within Sama_0682at 843.821 kb on - strand, within Sama_0682at 843.829 kb on + strand, within Sama_0682at 843.829 kb on + strand, within Sama_0682at 843.895 kb on + strand, within Sama_0682at 843.896 kb on - strand, within Sama_0682at 843.968 kb on - strand, within Sama_0682at 843.998 kb on - strand, within Sama_0682at 844.007 kb on - strand, within Sama_0682at 844.007 kb on - strand, within Sama_0682at 844.051 kb on - strand, within Sama_0682at 844.089 kb on + strand, within Sama_0682at 844.089 kb on + strand, within Sama_0682at 844.090 kb on - strand, within Sama_0682at 844.104 kb on + strand, within Sama_0682at 844.104 kb on + strand, within Sama_0682at 844.105 kb on - strand, within Sama_0682at 844.278 kb on + strandat 844.278 kb on + strandat 844.286 kb on - strandat 844.296 kb on + strandat 844.296 kb on + strandat 844.296 kb on + strandat 844.296 kb on + strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.329 kb on + strandat 844.329 kb on + strandat 844.330 kb on - strandat 844.335 kb on + strandat 844.335 kb on + strandat 844.336 kb on - strandat 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.481 kb on + strand, within Sama_0683at 844.502 kb on - strand, within Sama_0683at 844.502 kb on - strand, within Sama_0683at 844.558 kb on + strand, within Sama_0683at 844.558 kb on + strand, within Sama_0683at 844.558 kb on + strand, within Sama_0683at 844.559 kb on - strand, within Sama_0683at 844.559 kb on - strand, within Sama_0683at 844.559 kb on - strand, within Sama_0683at 844.603 kb on + strand, within Sama_0683at 844.652 kb on + strandat 844.652 kb on + strandat 844.653 kb on - strandat 844.710 kb on - strandat 844.712 kb on + strandat 844.713 kb on - strandat 844.713 kb on - strandat 844.713 kb on - strandat 844.744 kb on + strandat 844.744 kb on + strandat 844.744 kb on + strandat 844.809 kb on + strandat 844.809 kb on + strandat 844.809 kb on + strandat 844.809 kb on + strandat 844.809 kb on + strandat 844.810 kb on - strandat 844.810 kb on - strandat 844.810 kb on - strandat 844.810 kb on - strandat 844.811 kb on + strandat 844.811 kb on + strandat 844.811 kb on + strandat 844.811 kb on + strandat 844.811 kb on + strandat 844.811 kb on + strandat 844.811 kb on + strandat 844.812 kb on - strandat 844.812 kb on - strandat 844.812 kb on - strandat 844.812 kb on - strandat 844.917 kb on + strandat 844.918 kb on - strandat 845.004 kb on + strand, within Sama_0684at 845.008 kb on - strand, within Sama_0684at 845.008 kb on - strand, within Sama_0684at 845.008 kb on - strand, within Sama_0684at 845.090 kb on + strand, within Sama_0684at 845.090 kb on + strand, within Sama_0684at 845.090 kb on + strand, within Sama_0684at 845.090 kb on + strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.091 kb on - strand, within Sama_0684at 845.122 kb on + strand, within Sama_0684at 845.122 kb on + strand, within Sama_0684at 845.122 kb on + strand, within Sama_0684at 845.134 kb on - strand, within Sama_0684at 845.158 kb on - strand, within Sama_0684at 845.158 kb on - strand, within Sama_0684at 845.227 kb on + strand, within Sama_0684at 845.285 kb on - strand, within Sama_0684at 845.322 kb on + strand, within Sama_0684at 845.322 kb on + strand, within Sama_0684at 845.322 kb on + strand, within Sama_0684at 845.322 kb on + strand, within Sama_0684at 845.323 kb on - strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.346 kb on + strand, within Sama_0684at 845.347 kb on - strand, within Sama_0684at 845.347 kb on - strand, within Sama_0684at 845.347 kb on - strand, within Sama_0684at 845.347 kb on - strand, within Sama_0684at 845.347 kb on - strand, within Sama_0684at 845.347 kb on - strand, within Sama_0684at 845.383 kb on + strand, within Sama_0684at 845.383 kb on + strand, within Sama_0684at 845.384 kb on - strand, within Sama_0684at 845.384 kb on - strand, within Sama_0684at 845.384 kb on - strand, within Sama_0684at 845.394 kb on + strand, within Sama_0684at 845.394 kb on + strand, within Sama_0684at 845.394 kb on + strand, within Sama_0684at 845.394 kb on + strand, within Sama_0684at 845.395 kb on - strand, within Sama_0684at 845.395 kb on - strand, within Sama_0684at 845.431 kb on + strand, within Sama_0684at 845.432 kb on - strand, within Sama_0684at 845.489 kb on - strand, within Sama_0684at 845.512 kb on - strand, within Sama_0684at 845.512 kb on - strand, within Sama_0684at 845.512 kb on - strand, within Sama_0684at 845.603 kb on - strand, within Sama_0684

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, microplate
remove
843,473 - -2.0
843,500 - +1.8
843,500 - -0.3
843,500 - -0.4
843,500 - +0.4
843,534 - -0.8
843,538 - -0.4
843,538 - +1.4
843,590 + +0.8
843,591 - -1.0
843,591 - +0.9
843,774 + Sama_0682 0.21 -0.6
843,774 + Sama_0682 0.21 -2.0
843,774 + Sama_0682 0.21 -0.8
843,774 + Sama_0682 0.21 +0.3
843,774 + Sama_0682 0.21 -0.4
843,774 + Sama_0682 0.21 -0.4
843,775 - Sama_0682 0.21 -0.1
843,775 - Sama_0682 0.21 +0.2
843,775 - Sama_0682 0.21 +0.2
843,807 + Sama_0682 0.25 -0.3
843,807 + Sama_0682 0.25 -0.0
843,807 + Sama_0682 0.25 -0.7
843,807 + Sama_0682 0.25 -0.4
843,807 + Sama_0682 0.25 -0.0
843,808 - Sama_0682 0.26 +0.3
843,808 - Sama_0682 0.26 +0.8
843,808 - Sama_0682 0.26 +0.6
843,808 - Sama_0682 0.26 -0.9
843,808 - Sama_0682 0.26 +0.4
843,815 + Sama_0682 0.27 +0.5
843,820 + Sama_0682 0.27 -0.2
843,820 + Sama_0682 0.27 -0.3
843,821 - Sama_0682 0.28 -1.2
843,829 + Sama_0682 0.29 -0.4
843,829 + Sama_0682 0.29 +2.6
843,895 + Sama_0682 0.39 -0.4
843,896 - Sama_0682 0.39 +0.1
843,968 - Sama_0682 0.49 +0.8
843,998 - Sama_0682 0.54 +0.2
844,007 - Sama_0682 0.55 -0.1
844,007 - Sama_0682 0.55 +1.2
844,051 - Sama_0682 0.62 -0.4
844,089 + Sama_0682 0.67 -0.4
844,089 + Sama_0682 0.67 -0.7
844,090 - Sama_0682 0.67 +0.9
844,104 + Sama_0682 0.69 +0.6
844,104 + Sama_0682 0.69 -0.4
844,105 - Sama_0682 0.70 -0.2
844,278 + -1.1
844,278 + +1.9
844,286 - +0.9
844,296 + -0.5
844,296 + -2.4
844,296 + -1.0
844,296 + +1.2
844,297 - +0.9
844,297 - +2.6
844,297 - +0.6
844,297 - +0.9
844,297 - +1.8
844,329 + -0.7
844,329 + -0.2
844,330 - +0.2
844,335 + +0.6
844,335 + +0.3
844,336 - -0.4
844,409 - Sama_0683 0.16 -0.4
844,409 - Sama_0683 0.16 -2.0
844,409 - Sama_0683 0.16 -3.0
844,409 - Sama_0683 0.16 +2.2
844,409 - Sama_0683 0.16 +1.4
844,481 + Sama_0683 0.41 -3.2
844,502 - Sama_0683 0.48 -0.4
844,502 - Sama_0683 0.48 +1.5
844,558 + Sama_0683 0.67 +1.4
844,558 + Sama_0683 0.67 +2.2
844,558 + Sama_0683 0.67 +3.6
844,559 - Sama_0683 0.68 +0.6
844,559 - Sama_0683 0.68 +0.2
844,559 - Sama_0683 0.68 +0.0
844,603 + Sama_0683 0.83 +1.2
844,652 + -0.8
844,652 + -0.4
844,653 - +1.3
844,710 - +1.0
844,712 + -0.2
844,713 - -1.4
844,713 - +1.4
844,713 - -1.4
844,744 + -0.3
844,744 + -0.8
844,744 + +0.2
844,809 + +0.6
844,809 + +1.4
844,809 + +1.6
844,809 + -0.4
844,809 + -2.0
844,810 - +0.3
844,810 - +0.3
844,810 - -0.7
844,810 - +0.3
844,811 + +0.3
844,811 + +0.6
844,811 + -0.4
844,811 + +0.5
844,811 + +0.6
844,811 + +0.9
844,811 + -0.1
844,812 - +0.1
844,812 - +0.6
844,812 - +0.1
844,812 - +0.1
844,917 + -0.1
844,918 - -1.0
845,004 + Sama_0684 0.15 -1.0
845,008 - Sama_0684 0.15 +0.0
845,008 - Sama_0684 0.15 +0.1
845,008 - Sama_0684 0.15 -0.4
845,090 + Sama_0684 0.20 -0.7
845,090 + Sama_0684 0.20 +0.6
845,090 + Sama_0684 0.20 -1.0
845,090 + Sama_0684 0.20 +0.2
845,091 - Sama_0684 0.20 +0.6
845,091 - Sama_0684 0.20 -0.4
845,091 - Sama_0684 0.20 -0.6
845,091 - Sama_0684 0.20 +0.6
845,091 - Sama_0684 0.20 -2.7
845,091 - Sama_0684 0.20 +0.3
845,091 - Sama_0684 0.20 -0.7
845,091 - Sama_0684 0.20 +0.9
845,122 + Sama_0684 0.21 -0.4
845,122 + Sama_0684 0.21 -0.4
845,122 + Sama_0684 0.21 +1.2
845,134 - Sama_0684 0.22 +0.3
845,158 - Sama_0684 0.23 +0.5
845,158 - Sama_0684 0.23 +1.0
845,227 + Sama_0684 0.27 -0.4
845,285 - Sama_0684 0.30 +1.2
845,322 + Sama_0684 0.32 -0.4
845,322 + Sama_0684 0.32 -0.1
845,322 + Sama_0684 0.32 +1.6
845,322 + Sama_0684 0.32 -0.5
845,323 - Sama_0684 0.32 -0.4
845,346 + Sama_0684 0.34 +1.6
845,346 + Sama_0684 0.34 +1.6
845,346 + Sama_0684 0.34 +0.6
845,346 + Sama_0684 0.34 -0.1
845,346 + Sama_0684 0.34 -0.3
845,346 + Sama_0684 0.34 -0.4
845,346 + Sama_0684 0.34 +0.2
845,346 + Sama_0684 0.34 +0.0
845,346 + Sama_0684 0.34 -0.4
845,347 - Sama_0684 0.34 -0.4
845,347 - Sama_0684 0.34 +1.8
845,347 - Sama_0684 0.34 +0.0
845,347 - Sama_0684 0.34 +0.5
845,347 - Sama_0684 0.34 +0.2
845,347 - Sama_0684 0.34 +0.8
845,383 + Sama_0684 0.36 -0.4
845,383 + Sama_0684 0.36 -0.1
845,384 - Sama_0684 0.36 +1.2
845,384 - Sama_0684 0.36 +2.0
845,384 - Sama_0684 0.36 +0.6
845,394 + Sama_0684 0.36 -0.4
845,394 + Sama_0684 0.36 +0.9
845,394 + Sama_0684 0.36 -0.7
845,394 + Sama_0684 0.36 +0.6
845,395 - Sama_0684 0.36 -1.4
845,395 - Sama_0684 0.36 -0.2
845,431 + Sama_0684 0.38 -0.4
845,432 - Sama_0684 0.39 -1.2
845,489 - Sama_0684 0.42 +0.1
845,512 - Sama_0684 0.43 +0.8
845,512 - Sama_0684 0.43 +0.4
845,512 - Sama_0684 0.43 -0.8
845,603 - Sama_0684 0.48 -2.0

Or see this region's nucleotide sequence