Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_837 and HP15_838 are separated by 49 nucleotides HP15_838 and HP15_839 overlap by 11 nucleotides HP15_839 and HP15_840 are separated by 68 nucleotides
HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066
_837
HP15_838: HP15_838 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 857,116 to 858,051
_838
HP15_839: HP15_839 - iron-hydroxamate transporter ATP-binding subunit, at 858,041 to 858,814
_839
HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685
_840
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.210 kb on - strand, within HP15_837 at 856.230 kb on + strand, within HP15_837 at 856.337 kb on - strand, within HP15_837 at 856.365 kb on + strand, within HP15_837 at 856.365 kb on + strand, within HP15_837 at 856.422 kb on + strand, within HP15_837 at 856.422 kb on + strand, within HP15_837 at 856.427 kb on + strand, within HP15_837 at 856.435 kb on - strand, within HP15_837 at 856.442 kb on - strand, within HP15_837 at 856.517 kb on - strand, within HP15_837 at 856.652 kb on + strand, within HP15_837 at 856.770 kb on + strand, within HP15_837 at 856.820 kb on + strand, within HP15_837 at 856.828 kb on - strand, within HP15_837 at 857.006 kb on + strand at 857.014 kb on - strand at 857.052 kb on - strand at 857.272 kb on + strand, within HP15_838 at 857.279 kb on + strand, within HP15_838 at 857.334 kb on - strand, within HP15_838 at 857.334 kb on - strand, within HP15_838 at 857.384 kb on + strand, within HP15_838 at 857.398 kb on - strand, within HP15_838 at 857.406 kb on + strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.617 kb on - strand, within HP15_838 at 857.648 kb on - strand, within HP15_838 at 857.648 kb on - strand, within HP15_838 at 857.669 kb on + strand, within HP15_838 at 857.674 kb on + strand, within HP15_838 at 857.697 kb on + strand, within HP15_838 at 857.697 kb on + strand, within HP15_838 at 857.828 kb on - strand, within HP15_838 at 857.865 kb on + strand, within HP15_838 at 857.908 kb on - strand, within HP15_838 at 857.940 kb on + strand, within HP15_838 at 857.948 kb on - strand, within HP15_838 at 858.208 kb on + strand, within HP15_839 at 858.235 kb on + strand, within HP15_839 at 858.271 kb on + strand, within HP15_839 at 858.279 kb on + strand, within HP15_839 at 858.279 kb on - strand, within HP15_839 at 858.300 kb on - strand, within HP15_839 at 858.317 kb on - strand, within HP15_839 at 858.339 kb on - strand, within HP15_839 at 858.342 kb on + strand, within HP15_839 at 858.403 kb on - strand, within HP15_839 at 858.413 kb on - strand, within HP15_839 at 858.426 kb on + strand, within HP15_839 at 858.471 kb on - strand, within HP15_839 at 858.669 kb on + strand, within HP15_839 at 858.738 kb on - strand at 858.757 kb on - strand at 858.765 kb on - strand at 858.787 kb on + strand at 858.838 kb on - strand at 858.905 kb on - strand at 858.920 kb on - strand at 858.935 kb on + strand at 859.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 856,210 - HP15_837 0.57 -2.8 856,230 + HP15_837 0.58 -0.4 856,337 - HP15_837 0.63 +0.8 856,365 + HP15_837 0.64 -1.7 856,365 + HP15_837 0.64 -0.3 856,422 + HP15_837 0.67 +0.2 856,422 + HP15_837 0.67 -0.9 856,427 + HP15_837 0.68 -0.1 856,435 - HP15_837 0.68 +0.0 856,442 - HP15_837 0.68 -0.1 856,517 - HP15_837 0.72 -1.2 856,652 + HP15_837 0.79 -0.7 856,770 + HP15_837 0.85 +2.0 856,820 + HP15_837 0.87 +1.6 856,828 - HP15_837 0.88 +2.7 857,006 + +1.4 857,014 - -0.5 857,052 - -0.3 857,272 + HP15_838 0.17 +1.5 857,279 + HP15_838 0.17 -0.9 857,334 - HP15_838 0.23 +0.4 857,334 - HP15_838 0.23 -0.3 857,384 + HP15_838 0.29 +0.2 857,398 - HP15_838 0.30 +0.0 857,406 + HP15_838 0.31 -0.9 857,414 - HP15_838 0.32 +1.2 857,414 - HP15_838 0.32 -1.4 857,414 - HP15_838 0.32 -0.1 857,617 - HP15_838 0.54 +1.6 857,648 - HP15_838 0.57 +1.4 857,648 - HP15_838 0.57 +2.6 857,669 + HP15_838 0.59 +0.3 857,674 + HP15_838 0.60 +1.3 857,697 + HP15_838 0.62 -0.6 857,697 + HP15_838 0.62 +1.9 857,828 - HP15_838 0.76 -1.3 857,865 + HP15_838 0.80 +2.1 857,908 - HP15_838 0.85 -0.6 857,940 + HP15_838 0.88 +1.4 857,948 - HP15_838 0.89 +2.3 858,208 + HP15_839 0.22 +2.1 858,235 + HP15_839 0.25 -0.6 858,271 + HP15_839 0.30 -0.6 858,279 + HP15_839 0.31 -1.3 858,279 - HP15_839 0.31 +0.1 858,300 - HP15_839 0.33 -0.6 858,317 - HP15_839 0.36 +0.3 858,339 - HP15_839 0.39 +1.6 858,342 + HP15_839 0.39 -0.1 858,403 - HP15_839 0.47 -1.1 858,413 - HP15_839 0.48 +1.7 858,426 + HP15_839 0.50 -1.8 858,471 - HP15_839 0.56 -1.4 858,669 + HP15_839 0.81 +1.6 858,738 - +1.8 858,757 - +0.2 858,765 - -1.1 858,787 + -1.1 858,838 - -1.1 858,905 - -0.2 858,920 - +2.4 858,935 + -1.1 859,033 - +1.7
Or see this region's nucleotide sequence