Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_727 and HP15_728 are separated by 76 nucleotides HP15_728 and HP15_729 are separated by 54 nucleotides HP15_729 and HP15_730 are separated by 82 nucleotides
HP15_727: HP15_727 - methyl-accepting chemotaxis sensory transducer, at 737,034 to 738,728
_727
HP15_728: HP15_728 - PhoH family protein, at 738,805 to 740,160
_728
HP15_729: HP15_729 - signal transduction protein with CBS domains, at 740,215 to 740,706
_729
HP15_730: HP15_730 - protein containing StAR-related lipid-transfer (START) domain, at 740,789 to 741,523
_730
Position (kb) 738
739
740
741 Strain fitness (log2 ratio) -1
0
1
2
3 at 737.837 kb on - strand, within HP15_727 at 737.888 kb on + strand, within HP15_727 at 737.896 kb on - strand, within HP15_727 at 738.081 kb on + strand, within HP15_727 at 738.108 kb on + strand, within HP15_727 at 738.123 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.262 kb on - strand, within HP15_727 at 738.314 kb on + strand at 738.401 kb on + strand, within HP15_727 at 738.475 kb on + strand, within HP15_727 at 738.485 kb on + strand, within HP15_727 at 738.485 kb on + strand, within HP15_727 at 738.544 kb on - strand, within HP15_727 at 738.572 kb on + strand at 738.597 kb on - strand at 738.729 kb on - strand at 738.853 kb on + strand at 738.875 kb on + strand at 738.907 kb on + strand at 738.915 kb on - strand at 738.959 kb on - strand, within HP15_728 at 738.975 kb on + strand, within HP15_728 at 739.007 kb on + strand, within HP15_728 at 739.128 kb on + strand, within HP15_728 at 739.223 kb on + strand, within HP15_728 at 739.243 kb on + strand, within HP15_728 at 739.358 kb on - strand, within HP15_728 at 739.361 kb on + strand, within HP15_728 at 739.482 kb on - strand, within HP15_728 at 739.676 kb on + strand, within HP15_728 at 739.818 kb on - strand, within HP15_728 at 739.902 kb on - strand, within HP15_728 at 739.920 kb on - strand, within HP15_728 at 739.973 kb on - strand, within HP15_728 at 740.170 kb on + strand at 740.188 kb on - strand at 740.188 kb on - strand at 740.228 kb on + strand at 740.484 kb on + strand, within HP15_729 at 740.500 kb on - strand, within HP15_729 at 740.517 kb on + strand, within HP15_729 at 740.721 kb on - strand at 740.769 kb on + strand at 740.769 kb on + strand at 740.769 kb on + strand at 740.775 kb on - strand at 740.887 kb on - strand, within HP15_730 at 740.922 kb on + strand, within HP15_730 at 740.951 kb on + strand, within HP15_730 at 740.977 kb on - strand, within HP15_730 at 741.008 kb on - strand, within HP15_730 at 741.090 kb on - strand, within HP15_730 at 741.097 kb on + strand, within HP15_730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 737,837 - HP15_727 0.47 +1.7 737,888 + HP15_727 0.50 +1.3 737,896 - HP15_727 0.51 +0.1 738,081 + HP15_727 0.62 -1.0 738,108 + HP15_727 0.63 -0.8 738,123 - HP15_727 0.64 +0.2 738,199 - HP15_727 0.69 -0.1 738,199 - HP15_727 0.69 -1.5 738,199 - HP15_727 0.69 -0.1 738,262 - HP15_727 0.72 -0.3 738,314 + +2.9 738,401 + HP15_727 0.81 -1.3 738,475 + HP15_727 0.85 -0.2 738,485 + HP15_727 0.86 -0.4 738,485 + HP15_727 0.86 +0.1 738,544 - HP15_727 0.89 -0.8 738,572 + +1.0 738,597 - -0.4 738,729 - -0.4 738,853 + +2.3 738,875 + +0.9 738,907 + +0.9 738,915 - -1.3 738,959 - HP15_728 0.11 -0.3 738,975 + HP15_728 0.13 +2.2 739,007 + HP15_728 0.15 -0.4 739,128 + HP15_728 0.24 -0.2 739,223 + HP15_728 0.31 -0.2 739,243 + HP15_728 0.32 -1.0 739,358 - HP15_728 0.41 +1.3 739,361 + HP15_728 0.41 +1.5 739,482 - HP15_728 0.50 -0.0 739,676 + HP15_728 0.64 +1.2 739,818 - HP15_728 0.75 +2.3 739,902 - HP15_728 0.81 -1.7 739,920 - HP15_728 0.82 -1.7 739,973 - HP15_728 0.86 -0.4 740,170 + -0.6 740,188 - +2.4 740,188 - +1.4 740,228 + -1.3 740,484 + HP15_729 0.55 +1.4 740,500 - HP15_729 0.58 +0.4 740,517 + HP15_729 0.61 +1.3 740,721 - +0.5 740,769 + +0.1 740,769 + +0.1 740,769 + -0.5 740,775 - +1.5 740,887 - HP15_730 0.13 +1.7 740,922 + HP15_730 0.18 +1.2 740,951 + HP15_730 0.22 +1.3 740,977 - HP15_730 0.26 +0.1 741,008 - HP15_730 0.30 -0.6 741,090 - HP15_730 0.41 -0.5 741,097 + HP15_730 0.42 -0.9
Or see this region's nucleotide sequence