Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_661 and HP15_662 are separated by 2 nucleotides HP15_662 and HP15_663 overlap by 8 nucleotides HP15_663 and HP15_664 overlap by 1 nucleotides HP15_664 and HP15_665 are separated by 51 nucleotides
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
HP15_662: HP15_662 - phage tail protein I, at 684,061 to 684,636
_662
HP15_663: HP15_663 - phage baseplate assembly protein, at 684,629 to 685,549
_663
HP15_664: HP15_664 - GPW/gp25, at 685,549 to 685,887
_664
HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724
_665
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 683.647 kb on + strand, within HP15_661 at 683.728 kb on - strand, within HP15_661 at 683.769 kb on - strand, within HP15_661 at 683.840 kb on - strand, within HP15_661 at 683.845 kb on - strand, within HP15_661 at 683.903 kb on + strand, within HP15_661 at 683.908 kb on + strand, within HP15_661 at 683.911 kb on - strand, within HP15_661 at 683.950 kb on + strand, within HP15_661 at 684.024 kb on + strand at 684.032 kb on - strand at 684.122 kb on - strand, within HP15_662 at 684.187 kb on - strand, within HP15_662 at 684.194 kb on + strand, within HP15_662 at 684.196 kb on + strand, within HP15_662 at 684.196 kb on + strand, within HP15_662 at 684.406 kb on - strand, within HP15_662 at 684.474 kb on + strand, within HP15_662 at 684.488 kb on + strand, within HP15_662 at 684.495 kb on - strand, within HP15_662 at 684.567 kb on + strand, within HP15_662 at 684.635 kb on - strand at 684.682 kb on + strand at 684.716 kb on + strand at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.729 kb on - strand, within HP15_663 at 684.746 kb on + strand, within HP15_663 at 684.773 kb on + strand, within HP15_663 at 684.901 kb on - strand, within HP15_663 at 684.968 kb on + strand, within HP15_663 at 684.970 kb on + strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 685.009 kb on + strand, within HP15_663 at 685.030 kb on - strand, within HP15_663 at 685.059 kb on + strand, within HP15_663 at 685.093 kb on + strand, within HP15_663 at 685.131 kb on + strand, within HP15_663 at 685.139 kb on - strand, within HP15_663 at 685.209 kb on + strand, within HP15_663 at 685.275 kb on - strand, within HP15_663 at 685.275 kb on - strand, within HP15_663 at 685.437 kb on + strand, within HP15_663 at 685.452 kb on + strand, within HP15_663 at 685.460 kb on - strand at 685.462 kb on + strand at 685.565 kb on - strand at 685.615 kb on + strand, within HP15_664 at 685.689 kb on - strand, within HP15_664 at 685.690 kb on + strand, within HP15_664 at 685.735 kb on - strand, within HP15_664 at 685.777 kb on - strand, within HP15_664 at 685.889 kb on - strand at 686.031 kb on + strand, within HP15_665 at 686.103 kb on - strand, within HP15_665 at 686.174 kb on - strand, within HP15_665 at 686.397 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.459 kb on - strand, within HP15_665 at 686.469 kb on + strand, within HP15_665 at 686.492 kb on + strand, within HP15_665
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 683,647 + HP15_661 0.47 -0.5 683,728 - HP15_661 0.58 +1.0 683,769 - HP15_661 0.63 -0.1 683,840 - HP15_661 0.72 +0.6 683,845 - HP15_661 0.73 +0.5 683,903 + HP15_661 0.80 +2.1 683,908 + HP15_661 0.81 -0.6 683,911 - HP15_661 0.81 -0.4 683,950 + HP15_661 0.86 -0.3 684,024 + +1.2 684,032 - +2.0 684,122 - HP15_662 0.11 +1.6 684,187 - HP15_662 0.22 -0.4 684,194 + HP15_662 0.23 +0.0 684,196 + HP15_662 0.23 -0.0 684,196 + HP15_662 0.23 -0.4 684,406 - HP15_662 0.60 -0.7 684,474 + HP15_662 0.72 +1.2 684,488 + HP15_662 0.74 +0.3 684,495 - HP15_662 0.75 -0.4 684,567 + HP15_662 0.88 +1.0 684,635 - +0.5 684,682 + -0.6 684,716 + +1.9 684,721 + HP15_663 0.10 +0.8 684,721 + HP15_663 0.10 +2.0 684,721 + HP15_663 0.10 +1.5 684,729 - HP15_663 0.11 +0.3 684,746 + HP15_663 0.13 +2.1 684,773 + HP15_663 0.16 -0.5 684,901 - HP15_663 0.30 -0.5 684,968 + HP15_663 0.37 -0.4 684,970 + HP15_663 0.37 -0.2 684,976 - HP15_663 0.38 +0.1 684,976 - HP15_663 0.38 -0.4 684,976 - HP15_663 0.38 +0.6 685,009 + HP15_663 0.41 +1.2 685,030 - HP15_663 0.44 +1.8 685,059 + HP15_663 0.47 +0.3 685,093 + HP15_663 0.50 +0.1 685,131 + HP15_663 0.55 -0.7 685,139 - HP15_663 0.55 -0.2 685,209 + HP15_663 0.63 +0.9 685,275 - HP15_663 0.70 +2.8 685,275 - HP15_663 0.70 +0.1 685,437 + HP15_663 0.88 +1.9 685,452 + HP15_663 0.89 +2.4 685,460 - +0.5 685,462 + -0.2 685,565 - +2.0 685,615 + HP15_664 0.19 -0.4 685,689 - HP15_664 0.41 -0.3 685,690 + HP15_664 0.42 -0.8 685,735 - HP15_664 0.55 -0.1 685,777 - HP15_664 0.67 +0.8 685,889 - -0.8 686,031 + HP15_665 0.12 +1.0 686,103 - HP15_665 0.21 -0.1 686,174 - HP15_665 0.30 +0.4 686,397 + HP15_665 0.58 -0.2 686,428 + HP15_665 0.62 +0.2 686,428 + HP15_665 0.62 +0.2 686,428 + HP15_665 0.62 +0.2 686,428 + HP15_665 0.62 +2.2 686,428 + HP15_665 0.62 +2.6 686,436 - HP15_665 0.63 +0.4 686,436 - HP15_665 0.63 +0.2 686,436 - HP15_665 0.63 -0.2 686,436 - HP15_665 0.63 -2.4 686,436 - HP15_665 0.63 +0.2 686,456 + HP15_665 0.66 +0.2 686,456 + HP15_665 0.66 -0.3 686,459 - HP15_665 0.66 +0.4 686,469 + HP15_665 0.67 +1.0 686,492 + HP15_665 0.70 +0.0
Or see this region's nucleotide sequence