Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_658 and HP15_659 overlap by 4 nucleotides HP15_659 and HP15_660 are separated by 1 nucleotides HP15_660 and HP15_661 are separated by 325 nucleotides
HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789
_658
HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568
_659
HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953
_660
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 680.873 kb on - strand, within HP15_658 at 680.947 kb on - strand, within HP15_658 at 681.011 kb on - strand, within HP15_658 at 681.025 kb on - strand, within HP15_658 at 681.081 kb on + strand, within HP15_658 at 681.160 kb on + strand, within HP15_658 at 681.168 kb on - strand, within HP15_658 at 681.217 kb on + strand, within HP15_658 at 681.217 kb on + strand, within HP15_658 at 681.225 kb on - strand, within HP15_658 at 681.256 kb on + strand, within HP15_658 at 681.304 kb on + strand, within HP15_658 at 681.304 kb on + strand, within HP15_658 at 681.312 kb on - strand, within HP15_658 at 681.312 kb on - strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.365 kb on + strand, within HP15_658 at 681.381 kb on - strand, within HP15_658 at 681.396 kb on - strand, within HP15_658 at 681.414 kb on - strand, within HP15_658 at 681.511 kb on - strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.574 kb on + strand at 681.605 kb on + strand at 681.646 kb on + strand at 681.646 kb on + strand at 681.705 kb on - strand at 681.736 kb on + strand at 681.771 kb on - strand at 681.771 kb on - strand at 681.962 kb on + strand, within HP15_659 at 681.977 kb on + strand, within HP15_659 at 682.165 kb on + strand, within HP15_659 at 682.175 kb on + strand, within HP15_659 at 682.324 kb on - strand, within HP15_659 at 682.325 kb on - strand, within HP15_659 at 682.338 kb on + strand, within HP15_659 at 682.359 kb on - strand, within HP15_659 at 682.417 kb on + strand, within HP15_659 at 682.514 kb on + strand at 682.554 kb on + strand at 682.573 kb on + strand at 682.573 kb on + strand at 682.581 kb on - strand at 682.581 kb on - strand at 682.639 kb on + strand, within HP15_660 at 682.640 kb on + strand, within HP15_660 at 682.644 kb on + strand, within HP15_660 at 682.831 kb on + strand, within HP15_660 at 682.834 kb on - strand, within HP15_660 at 682.875 kb on + strand, within HP15_660 at 682.910 kb on + strand, within HP15_660 at 683.149 kb on + strand at 683.155 kb on + strand at 683.228 kb on + strand at 683.285 kb on - strand at 683.285 kb on - strand at 683.321 kb on + strand at 683.345 kb on - strand at 683.371 kb on + strand, within HP15_661 at 683.438 kb on + strand, within HP15_661 at 683.456 kb on - strand, within HP15_661
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 680,873 - HP15_658 0.64 +1.6 680,947 - HP15_658 0.67 +2.2 681,011 - HP15_658 0.70 +0.6 681,025 - HP15_658 0.70 -0.0 681,081 + HP15_658 0.72 -0.4 681,160 + HP15_658 0.76 +0.1 681,168 - HP15_658 0.76 +0.3 681,217 + HP15_658 0.78 -0.2 681,217 + HP15_658 0.78 +1.8 681,225 - HP15_658 0.78 +2.4 681,256 + HP15_658 0.79 +2.2 681,304 + HP15_658 0.81 +1.8 681,304 + HP15_658 0.81 +0.3 681,312 - HP15_658 0.81 +0.2 681,312 - HP15_658 0.81 +3.6 681,321 + HP15_658 0.82 +1.2 681,321 + HP15_658 0.82 +0.4 681,321 + HP15_658 0.82 +1.0 681,365 + HP15_658 0.83 +2.3 681,381 - HP15_658 0.84 +2.2 681,396 - HP15_658 0.85 -0.5 681,414 - HP15_658 0.85 -0.4 681,511 - HP15_658 0.89 +2.1 681,513 + HP15_658 0.89 -1.0 681,513 + HP15_658 0.89 +1.5 681,513 + HP15_658 0.89 -1.0 681,513 + HP15_658 0.89 +0.8 681,521 - HP15_658 0.90 +0.6 681,521 - HP15_658 0.90 +0.6 681,521 - HP15_658 0.90 +0.5 681,574 + +1.2 681,605 + -1.7 681,646 + +0.1 681,646 + +1.9 681,705 - -0.2 681,736 + -0.8 681,771 - -1.2 681,771 - -0.3 681,962 + HP15_659 0.22 +1.1 681,977 + HP15_659 0.24 +2.8 682,165 + HP15_659 0.48 +0.5 682,175 + HP15_659 0.50 +2.1 682,324 - HP15_659 0.69 +5.0 682,325 - HP15_659 0.69 +1.8 682,338 + HP15_659 0.70 +0.0 682,359 - HP15_659 0.73 +0.0 682,417 + HP15_659 0.81 +1.1 682,514 + +0.5 682,554 + -0.7 682,573 + -0.3 682,573 + -0.2 682,581 - +2.0 682,581 - +0.3 682,639 + HP15_660 0.18 -0.4 682,640 + HP15_660 0.18 +2.3 682,644 + HP15_660 0.19 -0.2 682,831 + HP15_660 0.68 +1.4 682,834 - HP15_660 0.69 +2.0 682,875 + HP15_660 0.79 +2.2 682,910 + HP15_660 0.89 -0.0 683,149 + +1.5 683,155 + +0.7 683,228 + -0.5 683,285 - -0.2 683,285 - +0.3 683,321 + +0.7 683,345 - -0.6 683,371 + HP15_661 0.12 +2.0 683,438 + HP15_661 0.20 -1.4 683,456 - HP15_661 0.23 +0.3
Or see this region's nucleotide sequence