Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_644 and HP15_645 are separated by 355 nucleotides HP15_645 and HP15_646 are separated by 232 nucleotides HP15_646 and HP15_647 are separated by 153 nucleotides
HP15_644: HP15_644 - conserved hypothetical protein, secreted, at 667,399 to 668,142
_644
HP15_645: HP15_645 - conserved hypothetical protein, at 668,498 to 669,187
_645
HP15_646: HP15_646 - hypothetical protein, at 669,420 to 669,770
_646
HP15_647: HP15_647 - conserved hypothetical protein, secreted, at 669,924 to 670,652
_647
Position (kb) 668
669
670 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 667.710 kb on + strand, within HP15_644 at 667.761 kb on - strand, within HP15_644 at 667.761 kb on - strand, within HP15_644 at 667.768 kb on + strand, within HP15_644 at 667.793 kb on + strand, within HP15_644 at 667.844 kb on + strand, within HP15_644 at 667.880 kb on - strand, within HP15_644 at 667.973 kb on - strand, within HP15_644 at 667.999 kb on - strand, within HP15_644 at 668.021 kb on + strand, within HP15_644 at 668.021 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.249 kb on + strand at 668.249 kb on + strand at 668.283 kb on + strand at 668.462 kb on - strand at 668.565 kb on + strand at 668.565 kb on + strand at 668.573 kb on - strand, within HP15_645 at 668.679 kb on + strand, within HP15_645 at 668.684 kb on + strand, within HP15_645 at 668.694 kb on + strand, within HP15_645 at 668.724 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 669.023 kb on + strand, within HP15_645 at 669.278 kb on + strand at 669.278 kb on + strand at 669.286 kb on + strand at 669.286 kb on - strand at 669.329 kb on + strand at 669.364 kb on + strand at 669.427 kb on + strand at 669.483 kb on + strand, within HP15_646 at 669.483 kb on + strand, within HP15_646 at 669.491 kb on - strand, within HP15_646 at 669.564 kb on - strand, within HP15_646 at 669.705 kb on - strand, within HP15_646 at 669.737 kb on + strand at 669.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 667,710 + HP15_644 0.42 -0.3 667,761 - HP15_644 0.49 -0.8 667,761 - HP15_644 0.49 +0.9 667,768 + HP15_644 0.50 +0.2 667,793 + HP15_644 0.53 +0.4 667,844 + HP15_644 0.60 +1.6 667,880 - HP15_644 0.65 +1.9 667,973 - HP15_644 0.77 -0.3 667,999 - HP15_644 0.81 -0.4 668,021 + HP15_644 0.84 +0.2 668,021 + HP15_644 0.84 -0.7 668,028 + HP15_644 0.85 -1.5 668,028 + HP15_644 0.85 -0.4 668,028 + HP15_644 0.85 +2.0 668,029 - HP15_644 0.85 +1.0 668,029 - HP15_644 0.85 -0.1 668,029 - HP15_644 0.85 -0.7 668,029 - HP15_644 0.85 +2.5 668,029 - HP15_644 0.85 -0.2 668,249 + +3.8 668,249 + +0.0 668,283 + +0.3 668,462 - -0.7 668,565 + +0.0 668,565 + -1.1 668,573 - HP15_645 0.11 +0.0 668,679 + HP15_645 0.26 +2.6 668,684 + HP15_645 0.27 -0.2 668,694 + HP15_645 0.28 +0.4 668,724 - HP15_645 0.33 -0.3 668,767 - HP15_645 0.39 +0.5 668,767 - HP15_645 0.39 -0.4 668,767 - HP15_645 0.39 +0.9 668,767 - HP15_645 0.39 +1.1 668,860 - HP15_645 0.52 +1.5 668,860 - HP15_645 0.52 -1.6 669,023 + HP15_645 0.76 +1.9 669,278 + -0.3 669,278 + -0.4 669,286 + +1.0 669,286 - -0.8 669,329 + +1.9 669,364 + -0.2 669,427 + +1.1 669,483 + HP15_646 0.18 +2.3 669,483 + HP15_646 0.18 +1.9 669,491 - HP15_646 0.20 +1.0 669,564 - HP15_646 0.41 +0.5 669,705 - HP15_646 0.81 +0.0 669,737 + +1.4 669,798 + +1.9
Or see this region's nucleotide sequence