Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_582 and HP15_583 are separated by 55 nucleotides HP15_583 and HP15_584 are separated by 46 nucleotides HP15_584 and HP15_585 are separated by 10 nucleotides HP15_585 and HP15_586 overlap by 4 nucleotides
HP15_582: HP15_582 - exonuclease VII, small subunit, at 604,354 to 604,608
_582
HP15_583: HP15_583 - protein containing DUF833, at 604,664 to 605,437
_583
HP15_584: HP15_584 - membrane protein containing DUF81, at 605,484 to 606,323
_584
HP15_585: HP15_585 - prolipoprotein diacylglyceryl transferase, at 606,334 to 607,122
_585
HP15_586: HP15_586 - thymidylate synthase, at 607,119 to 607,958
_586
Position (kb) 605
606
607 Strain fitness (log2 ratio) -1
0
1
2 at 604.509 kb on - strand, within HP15_582 at 604.651 kb on - strand at 604.651 kb on - strand at 604.829 kb on + strand, within HP15_583 at 604.912 kb on + strand, within HP15_583 at 604.920 kb on - strand, within HP15_583 at 605.013 kb on + strand, within HP15_583 at 605.090 kb on - strand, within HP15_583 at 605.114 kb on - strand, within HP15_583 at 605.132 kb on - strand, within HP15_583 at 605.134 kb on - strand, within HP15_583 at 605.163 kb on + strand, within HP15_583 at 605.238 kb on + strand, within HP15_583 at 605.246 kb on - strand, within HP15_583 at 605.246 kb on - strand, within HP15_583 at 605.336 kb on + strand, within HP15_583 at 605.439 kb on + strand at 605.439 kb on + strand at 605.439 kb on + strand at 605.447 kb on - strand at 605.447 kb on - strand at 605.447 kb on - strand at 605.484 kb on + strand at 605.486 kb on + strand at 605.571 kb on + strand, within HP15_584 at 605.728 kb on + strand, within HP15_584 at 605.762 kb on + strand, within HP15_584 at 605.769 kb on + strand, within HP15_584 at 605.774 kb on + strand, within HP15_584 at 606.013 kb on + strand, within HP15_584 at 606.013 kb on + strand, within HP15_584 at 606.065 kb on + strand, within HP15_584 at 606.113 kb on + strand, within HP15_584 at 606.119 kb on + strand, within HP15_584 at 606.129 kb on + strand, within HP15_584 at 606.229 kb on + strand, within HP15_584 at 606.229 kb on + strand, within HP15_584
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 604,509 - HP15_582 0.61 +1.9 604,651 - +1.8 604,651 - +0.5 604,829 + HP15_583 0.21 +0.8 604,912 + HP15_583 0.32 +1.6 604,920 - HP15_583 0.33 +1.4 605,013 + HP15_583 0.45 -0.9 605,090 - HP15_583 0.55 +0.8 605,114 - HP15_583 0.58 +2.0 605,132 - HP15_583 0.60 +1.9 605,134 - HP15_583 0.61 +1.0 605,163 + HP15_583 0.64 +1.5 605,238 + HP15_583 0.74 -0.1 605,246 - HP15_583 0.75 +1.4 605,246 - HP15_583 0.75 +0.1 605,336 + HP15_583 0.87 +0.4 605,439 + +1.7 605,439 + +0.7 605,439 + +0.3 605,447 - +1.9 605,447 - -0.6 605,447 - -0.6 605,484 + +2.4 605,486 + -1.1 605,571 + HP15_584 0.10 -1.0 605,728 + HP15_584 0.29 -1.2 605,762 + HP15_584 0.33 -1.1 605,769 + HP15_584 0.34 -0.3 605,774 + HP15_584 0.35 -0.4 606,013 + HP15_584 0.63 +1.8 606,013 + HP15_584 0.63 +0.4 606,065 + HP15_584 0.69 -0.0 606,113 + HP15_584 0.75 -0.7 606,119 + HP15_584 0.76 -0.5 606,129 + HP15_584 0.77 -0.2 606,229 + HP15_584 0.89 +0.6 606,229 + HP15_584 0.89 +0.5
Or see this region's nucleotide sequence