Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4121 and HP15_4122 are separated by 109 nucleotides HP15_4122 and HP15_4123 overlap by 1 nucleotides HP15_4123 and HP15_4124 are separated by 197 nucleotides
HP15_4121: HP15_4121 - cytoplasmic chaperone TorD family protein, at 4,357,650 to 4,358,261
_4121
HP15_4122: HP15_4122 - conserved hypothetical protein, at 4,358,371 to 4,358,997
_4122
HP15_4123: HP15_4123 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 4,358,997 to 4,359,587
_4123
HP15_4124: HP15_4124 - protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup domains, at 4,359,785 to 4,361,698
_4124
Position (kb)
4358
4359 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4357.385 kb on - strand at 4357.385 kb on - strand at 4357.412 kb on - strand at 4357.440 kb on + strand at 4357.460 kb on - strand at 4357.485 kb on + strand at 4357.493 kb on - strand at 4357.637 kb on - strand at 4357.865 kb on + strand, within HP15_4121 at 4357.992 kb on + strand, within HP15_4121 at 4358.057 kb on + strand, within HP15_4121 at 4358.426 kb on - strand at 4358.436 kb on - strand, within HP15_4122 at 4358.490 kb on + strand, within HP15_4122 at 4358.490 kb on + strand, within HP15_4122 at 4358.498 kb on - strand, within HP15_4122 at 4358.533 kb on - strand, within HP15_4122 at 4358.630 kb on - strand, within HP15_4122 at 4358.630 kb on - strand, within HP15_4122 at 4358.678 kb on - strand, within HP15_4122 at 4358.680 kb on - strand, within HP15_4122 at 4358.699 kb on - strand, within HP15_4122 at 4358.748 kb on - strand, within HP15_4122 at 4358.748 kb on - strand, within HP15_4122 at 4358.806 kb on - strand, within HP15_4122 at 4358.875 kb on - strand, within HP15_4122 at 4358.925 kb on - strand, within HP15_4122 at 4358.925 kb on - strand, within HP15_4122 at 4358.951 kb on + strand at 4359.158 kb on + strand, within HP15_4123 at 4359.225 kb on - strand, within HP15_4123 at 4359.339 kb on - strand, within HP15_4123 at 4359.391 kb on - strand, within HP15_4123 at 4359.426 kb on + strand, within HP15_4123 at 4359.552 kb on + strand at 4359.555 kb on - strand at 4359.557 kb on + strand at 4359.565 kb on - strand at 4359.565 kb on - strand at 4359.723 kb on + strand at 4359.761 kb on + strand at 4359.850 kb on - strand at 4359.983 kb on - strand, within HP15_4124
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 4,357,385 - +0.4 4,357,385 - -0.4 4,357,412 - -1.0 4,357,440 + -0.8 4,357,460 - -0.9 4,357,485 + +0.9 4,357,493 - -0.5 4,357,637 - -1.0 4,357,865 + HP15_4121 0.35 +0.8 4,357,992 + HP15_4121 0.56 +0.5 4,358,057 + HP15_4121 0.67 +1.6 4,358,426 - -0.5 4,358,436 - HP15_4122 0.10 +0.4 4,358,490 + HP15_4122 0.19 -0.6 4,358,490 + HP15_4122 0.19 +1.9 4,358,498 - HP15_4122 0.20 +1.4 4,358,533 - HP15_4122 0.26 +1.7 4,358,630 - HP15_4122 0.41 -2.2 4,358,630 - HP15_4122 0.41 +1.7 4,358,678 - HP15_4122 0.49 +1.4 4,358,680 - HP15_4122 0.49 +1.7 4,358,699 - HP15_4122 0.52 +2.6 4,358,748 - HP15_4122 0.60 +0.1 4,358,748 - HP15_4122 0.60 -0.7 4,358,806 - HP15_4122 0.69 +0.1 4,358,875 - HP15_4122 0.80 -0.6 4,358,925 - HP15_4122 0.88 +1.5 4,358,925 - HP15_4122 0.88 -0.8 4,358,951 + -0.0 4,359,158 + HP15_4123 0.27 -0.8 4,359,225 - HP15_4123 0.39 +0.3 4,359,339 - HP15_4123 0.58 +1.7 4,359,391 - HP15_4123 0.67 +1.3 4,359,426 + HP15_4123 0.73 -0.6 4,359,552 + -1.3 4,359,555 - -0.4 4,359,557 + +1.9 4,359,565 - -0.2 4,359,565 - +1.9 4,359,723 + -1.1 4,359,761 + +1.8 4,359,850 - -0.9 4,359,983 - HP15_4124 0.10 +0.7
Or see this region's nucleotide sequence