Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4017 and HP15_4018 are separated by 83 nucleotides HP15_4018 and HP15_4019 are separated by 75 nucleotides
HP15_4017: HP15_4017 - formaldehyde dehydrogenase (glutathione-dependent), at 4,251,469 to 4,252,581
_4017
HP15_4018: HP15_4018 - membrane protein containing antibiotic biosynthesis monooxygenase domain, at 4,252,665 to 4,253,261
_4018
HP15_4019: HP15_4019 - protein containing DUF1329, at 4,253,337 to 4,254,626
_4019
Position (kb) 4252
4253
4254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4251.794 kb on - strand, within HP15_4017 at 4251.818 kb on - strand, within HP15_4017 at 4251.884 kb on + strand, within HP15_4017 at 4251.949 kb on + strand, within HP15_4017 at 4252.003 kb on + strand, within HP15_4017 at 4252.003 kb on + strand, within HP15_4017 at 4252.005 kb on + strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.011 kb on - strand, within HP15_4017 at 4252.021 kb on + strand, within HP15_4017 at 4252.029 kb on - strand, within HP15_4017 at 4252.233 kb on + strand, within HP15_4017 at 4252.266 kb on - strand, within HP15_4017 at 4252.317 kb on - strand, within HP15_4017 at 4252.400 kb on - strand, within HP15_4017 at 4252.410 kb on - strand, within HP15_4017 at 4252.425 kb on + strand, within HP15_4017 at 4252.426 kb on - strand, within HP15_4017 at 4252.548 kb on + strand at 4252.556 kb on - strand at 4252.556 kb on - strand at 4252.556 kb on - strand at 4252.591 kb on + strand at 4252.591 kb on - strand at 4252.599 kb on - strand at 4252.601 kb on + strand at 4252.609 kb on - strand at 4252.807 kb on - strand, within HP15_4018 at 4252.879 kb on + strand, within HP15_4018 at 4252.924 kb on - strand, within HP15_4018 at 4252.967 kb on - strand, within HP15_4018 at 4253.032 kb on - strand, within HP15_4018 at 4253.049 kb on + strand, within HP15_4018 at 4253.102 kb on - strand, within HP15_4018 at 4253.112 kb on - strand, within HP15_4018 at 4253.151 kb on + strand, within HP15_4018 at 4253.358 kb on - strand at 4253.415 kb on - strand at 4253.430 kb on - strand at 4253.461 kb on - strand at 4253.512 kb on + strand, within HP15_4019 at 4253.512 kb on + strand, within HP15_4019 at 4253.520 kb on - strand, within HP15_4019 at 4253.683 kb on - strand, within HP15_4019 at 4253.683 kb on - strand, within HP15_4019 at 4253.854 kb on + strand, within HP15_4019 at 4253.884 kb on - strand, within HP15_4019 at 4253.950 kb on + strand, within HP15_4019 at 4254.023 kb on + strand, within HP15_4019 at 4254.056 kb on + strand, within HP15_4019 at 4254.056 kb on + strand, within HP15_4019
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 4,251,794 - HP15_4017 0.29 -0.9 4,251,818 - HP15_4017 0.31 +0.2 4,251,884 + HP15_4017 0.37 +1.9 4,251,949 + HP15_4017 0.43 -0.4 4,252,003 + HP15_4017 0.48 -0.4 4,252,003 + HP15_4017 0.48 -2.2 4,252,005 + HP15_4017 0.48 +2.1 4,252,011 - HP15_4017 0.49 -0.1 4,252,011 - HP15_4017 0.49 -0.8 4,252,011 - HP15_4017 0.49 -0.0 4,252,011 - HP15_4017 0.49 -0.4 4,252,011 - HP15_4017 0.49 +1.2 4,252,011 - HP15_4017 0.49 +0.2 4,252,011 - HP15_4017 0.49 -0.3 4,252,011 - HP15_4017 0.49 -2.9 4,252,021 + HP15_4017 0.50 +1.8 4,252,029 - HP15_4017 0.50 -0.1 4,252,233 + HP15_4017 0.69 +2.7 4,252,266 - HP15_4017 0.72 +1.6 4,252,317 - HP15_4017 0.76 -0.3 4,252,400 - HP15_4017 0.84 -1.6 4,252,410 - HP15_4017 0.85 +0.3 4,252,425 + HP15_4017 0.86 +1.8 4,252,426 - HP15_4017 0.86 +1.5 4,252,548 + +2.0 4,252,556 - +0.3 4,252,556 - -0.1 4,252,556 - -0.5 4,252,591 + +1.4 4,252,591 - +1.8 4,252,599 - +1.6 4,252,601 + -0.3 4,252,609 - -0.8 4,252,807 - HP15_4018 0.24 -0.6 4,252,879 + HP15_4018 0.36 +1.8 4,252,924 - HP15_4018 0.43 -0.1 4,252,967 - HP15_4018 0.51 -0.5 4,253,032 - HP15_4018 0.61 +0.6 4,253,049 + HP15_4018 0.64 -0.1 4,253,102 - HP15_4018 0.73 -0.6 4,253,112 - HP15_4018 0.75 -0.7 4,253,151 + HP15_4018 0.81 -0.8 4,253,358 - +1.6 4,253,415 - -0.4 4,253,430 - -0.1 4,253,461 - +2.0 4,253,512 + HP15_4019 0.14 -0.3 4,253,512 + HP15_4019 0.14 -1.7 4,253,520 - HP15_4019 0.14 -0.3 4,253,683 - HP15_4019 0.27 +0.2 4,253,683 - HP15_4019 0.27 -0.4 4,253,854 + HP15_4019 0.40 +0.7 4,253,884 - HP15_4019 0.42 +2.0 4,253,950 + HP15_4019 0.48 -2.8 4,254,023 + HP15_4019 0.53 -0.5 4,254,056 + HP15_4019 0.56 +0.1 4,254,056 + HP15_4019 0.56 -0.2
Or see this region's nucleotide sequence