Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2713 and HP15_2714 are separated by 54 nucleotides HP15_2714 and HP15_2715 are separated by 76 nucleotides
HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386
_2713
HP15_2714: HP15_2714 - elongation factor P-like protein, at 2,866,441 to 2,867,007
_2714
HP15_2715: HP15_2715 - low specificity L-threonine aldolase, at 2,867,084 to 2,868,115
_2715
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2865.496 kb on + strand, within HP15_2713 at 2865.523 kb on - strand, within HP15_2713 at 2865.567 kb on - strand, within HP15_2713 at 2865.569 kb on + strand, within HP15_2713 at 2865.641 kb on + strand, within HP15_2713 at 2865.649 kb on - strand, within HP15_2713 at 2865.658 kb on + strand, within HP15_2713 at 2865.673 kb on + strand, within HP15_2713 at 2865.678 kb on + strand, within HP15_2713 at 2865.678 kb on + strand, within HP15_2713 at 2865.773 kb on - strand, within HP15_2713 at 2865.938 kb on + strand, within HP15_2713 at 2865.938 kb on + strand, within HP15_2713 at 2865.943 kb on + strand, within HP15_2713 at 2865.948 kb on + strand, within HP15_2713 at 2866.024 kb on + strand, within HP15_2713 at 2866.079 kb on - strand, within HP15_2713 at 2866.089 kb on - strand, within HP15_2713 at 2866.112 kb on - strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.169 kb on + strand, within HP15_2713 at 2866.192 kb on - strand, within HP15_2713 at 2866.386 kb on + strand at 2866.386 kb on + strand at 2866.467 kb on + strand at 2866.475 kb on - strand at 2866.475 kb on - strand at 2866.555 kb on - strand, within HP15_2714 at 2866.611 kb on + strand, within HP15_2714 at 2866.728 kb on - strand, within HP15_2714 at 2866.818 kb on + strand, within HP15_2714 at 2866.836 kb on + strand, within HP15_2714 at 2866.864 kb on + strand, within HP15_2714 at 2866.920 kb on - strand, within HP15_2714 at 2867.088 kb on - strand at 2867.166 kb on - strand at 2867.265 kb on - strand, within HP15_2715 at 2867.503 kb on - strand, within HP15_2715 at 2867.513 kb on + strand, within HP15_2715 at 2867.521 kb on - strand, within HP15_2715 at 2867.593 kb on - strand, within HP15_2715 at 2867.643 kb on + strand, within HP15_2715 at 2867.653 kb on + strand, within HP15_2715 at 2867.661 kb on + strand, within HP15_2715 at 2867.669 kb on - strand, within HP15_2715 at 2867.685 kb on - strand, within HP15_2715 at 2867.689 kb on + strand, within HP15_2715 at 2867.689 kb on + strand, within HP15_2715 at 2867.785 kb on - strand, within HP15_2715 at 2867.868 kb on - strand, within HP15_2715
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,865,496 + HP15_2713 0.23 -2.4 2,865,523 - HP15_2713 0.26 +0.7 2,865,567 - HP15_2713 0.29 -0.8 2,865,569 + HP15_2713 0.29 +1.2 2,865,641 + HP15_2713 0.36 -0.6 2,865,649 - HP15_2713 0.36 -0.1 2,865,658 + HP15_2713 0.37 -1.2 2,865,673 + HP15_2713 0.38 -1.2 2,865,678 + HP15_2713 0.39 +1.8 2,865,678 + HP15_2713 0.39 -0.0 2,865,773 - HP15_2713 0.47 -0.4 2,865,938 + HP15_2713 0.61 -2.0 2,865,938 + HP15_2713 0.61 -0.6 2,865,943 + HP15_2713 0.62 +0.1 2,865,948 + HP15_2713 0.62 +0.8 2,866,024 + HP15_2713 0.69 +1.0 2,866,079 - HP15_2713 0.73 +1.8 2,866,089 - HP15_2713 0.74 -0.5 2,866,112 - HP15_2713 0.76 -0.5 2,866,122 + HP15_2713 0.77 +1.6 2,866,122 + HP15_2713 0.77 -0.5 2,866,169 + HP15_2713 0.81 -0.2 2,866,192 - HP15_2713 0.83 +0.2 2,866,386 + -0.1 2,866,386 + -0.5 2,866,467 + +1.6 2,866,475 - +1.5 2,866,475 - -0.3 2,866,555 - HP15_2714 0.20 +0.1 2,866,611 + HP15_2714 0.30 -0.7 2,866,728 - HP15_2714 0.51 -2.2 2,866,818 + HP15_2714 0.66 -2.9 2,866,836 + HP15_2714 0.70 -0.3 2,866,864 + HP15_2714 0.75 -0.6 2,866,920 - HP15_2714 0.84 +1.2 2,867,088 - +0.7 2,867,166 - -0.4 2,867,265 - HP15_2715 0.18 -2.7 2,867,503 - HP15_2715 0.41 +0.1 2,867,513 + HP15_2715 0.42 +0.0 2,867,521 - HP15_2715 0.42 -1.3 2,867,593 - HP15_2715 0.49 +0.1 2,867,643 + HP15_2715 0.54 -0.5 2,867,653 + HP15_2715 0.55 +2.0 2,867,661 + HP15_2715 0.56 +1.9 2,867,669 - HP15_2715 0.57 +1.3 2,867,685 - HP15_2715 0.58 -0.2 2,867,689 + HP15_2715 0.59 -0.6 2,867,689 + HP15_2715 0.59 +1.0 2,867,785 - HP15_2715 0.68 -0.3 2,867,868 - HP15_2715 0.76 -0.3
Or see this region's nucleotide sequence