Strain Fitness in Marinobacter adhaerens HP15 around HP15_2473

Experiment: L-Alanine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2471 and HP15_2472 are separated by 13 nucleotidesHP15_2472 and HP15_2473 are separated by 845 nucleotidesHP15_2473 and HP15_2474 are separated by 40 nucleotidesHP15_2474 and HP15_2475 overlap by 4 nucleotides HP15_2471: HP15_2471 - apolipoprotein N-acyltransferase, at 2,610,002 to 2,611,564 _2471 HP15_2472: HP15_2472 - hypothetical protein, at 2,611,578 to 2,611,685 _2472 HP15_2473: HP15_2473 - leucyl-tRNA synthetase, at 2,612,531 to 2,615,116 _2473 HP15_2474: HP15_2474 - rare lipoprotein B, at 2,615,157 to 2,615,705 _2474 HP15_2475: HP15_2475 - DNA polymerase III, delta subunit, at 2,615,702 to 2,616,709 _2475 Position (kb) 2612 2613 2614 2615 2616Strain fitness (log2 ratio) -1 0 1 2at 2611.609 kb on - strand, within HP15_2472at 2611.619 kb on + strand, within HP15_2472at 2611.692 kb on - strandat 2611.697 kb on - strandat 2612.060 kb on + strandat 2612.147 kb on + strandat 2612.194 kb on - strandat 2612.280 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
remove
2,611,609 - HP15_2472 0.29 +1.7
2,611,619 + HP15_2472 0.38 +1.7
2,611,692 - -0.6
2,611,697 - +1.9
2,612,060 + -1.0
2,612,147 + -0.7
2,612,194 - -0.2
2,612,280 - -0.7

Or see this region's nucleotide sequence