Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2291 and HP15_2292 are separated by 67 nucleotides HP15_2292 and HP15_2293 are separated by 133 nucleotides HP15_2293 and HP15_2294 overlap by 8 nucleotides HP15_2294 and HP15_2295 are separated by 170 nucleotides
HP15_2291: HP15_2291 - conserved hypothetical protein, at 2,413,837 to 2,414,229
_2291
HP15_2292: HP15_2292 - purine-binding chemotaxis protein CheW, at 2,414,297 to 2,414,785
_2292
HP15_2293: HP15_2293 - protein containing CheW-like domain, at 2,414,919 to 2,415,728
_2293
HP15_2294: HP15_2294 - chromosome partitioning protein ParA, at 2,415,721 to 2,416,542
_2294
HP15_2295: HP15_2295 - flagellar motor protein MotD, at 2,416,713 to 2,417,495
_2295
Position (kb)
2414
2415
2416 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2413.941 kb on + strand, within HP15_2291 at 2413.941 kb on + strand, within HP15_2291 at 2414.054 kb on - strand, within HP15_2291 at 2414.088 kb on + strand, within HP15_2291 at 2414.094 kb on + strand, within HP15_2291 at 2414.102 kb on - strand, within HP15_2291 at 2414.120 kb on + strand, within HP15_2291 at 2414.213 kb on - strand at 2414.456 kb on + strand, within HP15_2292 at 2414.673 kb on + strand, within HP15_2292 at 2414.705 kb on - strand, within HP15_2292 at 2414.729 kb on + strand, within HP15_2292 at 2414.748 kb on + strand at 2414.853 kb on + strand at 2414.896 kb on - strand at 2414.930 kb on - strand at 2414.966 kb on + strand at 2414.997 kb on + strand at 2415.082 kb on - strand, within HP15_2293 at 2415.089 kb on - strand, within HP15_2293 at 2415.092 kb on + strand, within HP15_2293 at 2415.186 kb on - strand, within HP15_2293 at 2415.186 kb on - strand, within HP15_2293 at 2415.256 kb on - strand, within HP15_2293 at 2415.308 kb on + strand, within HP15_2293 at 2415.368 kb on + strand, within HP15_2293 at 2415.376 kb on - strand, within HP15_2293 at 2415.515 kb on + strand, within HP15_2293 at 2415.601 kb on - strand, within HP15_2293 at 2415.738 kb on + strand at 2415.825 kb on + strand, within HP15_2294 at 2415.825 kb on + strand, within HP15_2294 at 2415.833 kb on - strand, within HP15_2294 at 2416.008 kb on - strand, within HP15_2294 at 2416.024 kb on - strand, within HP15_2294 at 2416.029 kb on + strand, within HP15_2294 at 2416.072 kb on + strand, within HP15_2294 at 2416.080 kb on - strand, within HP15_2294 at 2416.096 kb on + strand, within HP15_2294 at 2416.106 kb on + strand, within HP15_2294 at 2416.146 kb on + strand, within HP15_2294 at 2416.191 kb on + strand, within HP15_2294 at 2416.191 kb on + strand, within HP15_2294 at 2416.191 kb on + strand, within HP15_2294 at 2416.236 kb on + strand, within HP15_2294 at 2416.321 kb on - strand, within HP15_2294 at 2416.325 kb on + strand, within HP15_2294 at 2416.378 kb on - strand, within HP15_2294 at 2416.520 kb on + strand at 2416.520 kb on + strand at 2416.601 kb on + strand at 2416.601 kb on + strand at 2416.668 kb on - strand at 2416.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,413,941 + HP15_2291 0.26 -0.1 2,413,941 + HP15_2291 0.26 +0.7 2,414,054 - HP15_2291 0.55 +0.5 2,414,088 + HP15_2291 0.64 +0.2 2,414,094 + HP15_2291 0.65 +0.5 2,414,102 - HP15_2291 0.67 +0.1 2,414,120 + HP15_2291 0.72 +2.7 2,414,213 - +0.2 2,414,456 + HP15_2292 0.33 +0.3 2,414,673 + HP15_2292 0.77 +0.1 2,414,705 - HP15_2292 0.83 -0.4 2,414,729 + HP15_2292 0.88 +0.3 2,414,748 + -0.6 2,414,853 + -0.6 2,414,896 - +0.8 2,414,930 - +0.4 2,414,966 + -0.1 2,414,997 + -0.4 2,415,082 - HP15_2293 0.20 -0.1 2,415,089 - HP15_2293 0.21 +1.0 2,415,092 + HP15_2293 0.21 +0.6 2,415,186 - HP15_2293 0.33 +0.1 2,415,186 - HP15_2293 0.33 +2.0 2,415,256 - HP15_2293 0.42 +2.2 2,415,308 + HP15_2293 0.48 +1.1 2,415,368 + HP15_2293 0.55 +0.4 2,415,376 - HP15_2293 0.56 +2.0 2,415,515 + HP15_2293 0.74 +0.5 2,415,601 - HP15_2293 0.84 -0.3 2,415,738 + +2.3 2,415,825 + HP15_2294 0.13 +2.1 2,415,825 + HP15_2294 0.13 +2.2 2,415,833 - HP15_2294 0.14 -0.4 2,416,008 - HP15_2294 0.35 +2.0 2,416,024 - HP15_2294 0.37 +2.3 2,416,029 + HP15_2294 0.37 +1.6 2,416,072 + HP15_2294 0.43 +2.3 2,416,080 - HP15_2294 0.44 +1.0 2,416,096 + HP15_2294 0.46 +0.8 2,416,106 + HP15_2294 0.47 +1.7 2,416,146 + HP15_2294 0.52 -1.7 2,416,191 + HP15_2294 0.57 +0.9 2,416,191 + HP15_2294 0.57 +0.9 2,416,191 + HP15_2294 0.57 +2.4 2,416,236 + HP15_2294 0.63 +0.6 2,416,321 - HP15_2294 0.73 -1.1 2,416,325 + HP15_2294 0.73 +2.2 2,416,378 - HP15_2294 0.80 +0.9 2,416,520 + +0.9 2,416,520 + +2.4 2,416,601 + -2.4 2,416,601 + +0.1 2,416,668 - -1.4 2,416,693 - -0.1
Or see this region's nucleotide sequence