Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_198 and HP15_199 overlap by 11 nucleotides HP15_199 and HP15_200 are separated by 123 nucleotides HP15_200 and HP15_201 are separated by 89 nucleotides
HP15_198: HP15_198 - LrgA protein, at 185,682 to 186,041
_198
HP15_199: HP15_199 - LrgB family protein, at 186,031 to 186,753
_199
HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472
_200
HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599
_201
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.979 kb on + strand, within HP15_198 at 186.054 kb on + strand at 186.054 kb on + strand at 186.085 kb on + strand at 186.112 kb on - strand, within HP15_199 at 186.157 kb on - strand, within HP15_199 at 186.161 kb on + strand, within HP15_199 at 186.420 kb on - strand, within HP15_199 at 186.429 kb on + strand, within HP15_199 at 186.430 kb on - strand, within HP15_199 at 186.517 kb on - strand, within HP15_199 at 186.565 kb on - strand, within HP15_199 at 186.584 kb on - strand, within HP15_199 at 186.627 kb on - strand, within HP15_199 at 186.721 kb on + strand at 186.812 kb on + strand at 186.812 kb on + strand at 187.018 kb on - strand at 187.055 kb on - strand, within HP15_200 at 187.079 kb on + strand, within HP15_200 at 187.079 kb on + strand, within HP15_200 at 187.185 kb on + strand, within HP15_200 at 187.237 kb on + strand, within HP15_200 at 187.247 kb on + strand, within HP15_200 at 187.319 kb on + strand, within HP15_200 at 187.532 kb on - strand, within HP15_200 at 187.555 kb on + strand, within HP15_200 at 187.756 kb on - strand, within HP15_200 at 187.895 kb on + strand, within HP15_200 at 187.902 kb on - strand, within HP15_200 at 187.929 kb on + strand, within HP15_200 at 187.937 kb on - strand, within HP15_200 at 187.947 kb on + strand, within HP15_200 at 188.072 kb on - strand, within HP15_200 at 188.096 kb on - strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.103 kb on - strand, within HP15_200 at 188.161 kb on + strand, within HP15_200 at 188.219 kb on + strand, within HP15_200 at 188.224 kb on + strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.375 kb on + strand at 188.383 kb on - strand at 188.441 kb on + strand at 188.449 kb on - strand at 188.501 kb on - strand at 188.538 kb on - strand at 188.552 kb on - strand at 188.634 kb on + strand at 188.658 kb on + strand at 188.684 kb on + strand, within HP15_201 at 188.956 kb on - strand, within HP15_201 at 189.013 kb on + strand, within HP15_201 at 189.013 kb on - strand, within HP15_201 at 189.021 kb on - strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.221 kb on + strand, within HP15_201 at 189.239 kb on + strand, within HP15_201 at 189.293 kb on + strand, within HP15_201 at 189.325 kb on - strand, within HP15_201 at 189.338 kb on + strand, within HP15_201 at 189.344 kb on - strand, within HP15_201 at 189.393 kb on - strand, within HP15_201 at 189.441 kb on + strand, within HP15_201
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 185,979 + HP15_198 0.82 -0.5 186,054 + +0.2 186,054 + +0.5 186,085 + -1.9 186,112 - HP15_199 0.11 -1.5 186,157 - HP15_199 0.17 +1.4 186,161 + HP15_199 0.18 +2.1 186,420 - HP15_199 0.54 -0.8 186,429 + HP15_199 0.55 -0.5 186,430 - HP15_199 0.55 -1.4 186,517 - HP15_199 0.67 -0.3 186,565 - HP15_199 0.74 +0.1 186,584 - HP15_199 0.76 +2.2 186,627 - HP15_199 0.82 -0.4 186,721 + -1.1 186,812 + -0.9 186,812 + +2.0 187,018 - -0.1 187,055 - HP15_200 0.11 +1.5 187,079 + HP15_200 0.13 -0.8 187,079 + HP15_200 0.13 -0.6 187,185 + HP15_200 0.19 -0.4 187,237 + HP15_200 0.23 -0.2 187,247 + HP15_200 0.23 +1.0 187,319 + HP15_200 0.28 -1.2 187,532 - HP15_200 0.41 -0.6 187,555 + HP15_200 0.42 +1.5 187,756 - HP15_200 0.55 -0.3 187,895 + HP15_200 0.64 -0.3 187,902 - HP15_200 0.64 +1.9 187,929 + HP15_200 0.66 -0.6 187,937 - HP15_200 0.66 +1.4 187,947 + HP15_200 0.67 -1.5 188,072 - HP15_200 0.75 -0.3 188,096 - HP15_200 0.76 +2.0 188,100 + HP15_200 0.77 +0.0 188,100 + HP15_200 0.77 -1.0 188,103 - HP15_200 0.77 -0.8 188,161 + HP15_200 0.80 -1.1 188,219 + HP15_200 0.84 -0.2 188,224 + HP15_200 0.84 +1.4 188,232 - HP15_200 0.85 -1.2 188,232 - HP15_200 0.85 -0.1 188,232 - HP15_200 0.85 -0.8 188,309 - HP15_200 0.90 +1.2 188,309 - HP15_200 0.90 -0.5 188,375 + +1.9 188,383 - +0.6 188,441 + +1.4 188,449 - -0.2 188,501 - -0.0 188,538 - -0.6 188,552 - -0.4 188,634 + +1.7 188,658 + -0.5 188,684 + HP15_201 0.12 +1.8 188,956 - HP15_201 0.38 -0.4 189,013 + HP15_201 0.43 -0.9 189,013 - HP15_201 0.43 +0.3 189,021 - HP15_201 0.44 -0.6 189,166 + HP15_201 0.58 -2.0 189,166 + HP15_201 0.58 -1.2 189,174 - HP15_201 0.59 -0.9 189,174 - HP15_201 0.59 +1.2 189,221 + HP15_201 0.63 -0.0 189,239 + HP15_201 0.65 -1.9 189,293 + HP15_201 0.70 -0.5 189,325 - HP15_201 0.74 -1.5 189,338 + HP15_201 0.75 -0.9 189,344 - HP15_201 0.75 -0.2 189,393 - HP15_201 0.80 +1.1 189,441 + HP15_201 0.85 -1.0
Or see this region's nucleotide sequence