Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1944 and HP15_1945 are separated by 102 nucleotides HP15_1945 and HP15_1946 are separated by 146 nucleotides
HP15_1944: HP15_1944 - conserved hypothetical protein, secreted, at 2,063,095 to 2,064,165
_1944
HP15_1945: HP15_1945 - conserved hypothetical protein, secreted, at 2,064,268 to 2,065,356
_1945
HP15_1946: HP15_1946 - membrane protein containing DUF6, transmembrane, at 2,065,503 to 2,066,453
_1946
Position (kb)
2064
2065
2066 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2063.309 kb on + strand, within HP15_1944 at 2063.358 kb on - strand, within HP15_1944 at 2063.367 kb on + strand, within HP15_1944 at 2063.389 kb on - strand, within HP15_1944 at 2063.415 kb on + strand, within HP15_1944 at 2063.525 kb on + strand, within HP15_1944 at 2063.525 kb on + strand, within HP15_1944 at 2063.525 kb on + strand, within HP15_1944 at 2063.565 kb on - strand, within HP15_1944 at 2063.598 kb on - strand, within HP15_1944 at 2063.717 kb on + strand, within HP15_1944 at 2063.768 kb on - strand, within HP15_1944 at 2063.771 kb on + strand, within HP15_1944 at 2063.789 kb on - strand, within HP15_1944 at 2063.803 kb on + strand, within HP15_1944 at 2063.839 kb on + strand, within HP15_1944 at 2063.847 kb on - strand, within HP15_1944 at 2063.850 kb on + strand, within HP15_1944 at 2063.850 kb on + strand, within HP15_1944 at 2063.953 kb on - strand, within HP15_1944 at 2064.049 kb on + strand, within HP15_1944 at 2064.063 kb on - strand at 2064.294 kb on + strand at 2064.354 kb on - strand at 2064.371 kb on + strand at 2064.456 kb on + strand, within HP15_1945 at 2064.545 kb on + strand, within HP15_1945 at 2064.545 kb on + strand, within HP15_1945 at 2064.559 kb on + strand, within HP15_1945 at 2064.577 kb on + strand, within HP15_1945 at 2064.577 kb on + strand, within HP15_1945 at 2064.744 kb on - strand, within HP15_1945 at 2064.744 kb on - strand, within HP15_1945 at 2064.746 kb on + strand, within HP15_1945 at 2064.754 kb on - strand, within HP15_1945 at 2064.758 kb on + strand, within HP15_1945 at 2064.892 kb on - strand, within HP15_1945 at 2064.971 kb on - strand, within HP15_1945 at 2065.115 kb on + strand, within HP15_1945 at 2065.123 kb on - strand, within HP15_1945 at 2065.160 kb on + strand, within HP15_1945 at 2065.160 kb on + strand, within HP15_1945 at 2065.168 kb on - strand, within HP15_1945 at 2065.304 kb on + strand at 2065.312 kb on - strand at 2065.374 kb on - strand at 2065.383 kb on + strand at 2065.396 kb on - strand at 2065.716 kb on + strand, within HP15_1946 at 2065.734 kb on + strand, within HP15_1946 at 2065.734 kb on + strand, within HP15_1946 at 2065.734 kb on + strand, within HP15_1946 at 2065.742 kb on - strand, within HP15_1946 at 2065.742 kb on - strand, within HP15_1946 at 2065.778 kb on + strand, within HP15_1946 at 2065.791 kb on + strand, within HP15_1946 at 2065.992 kb on + strand, within HP15_1946 at 2066.062 kb on + strand, within HP15_1946 at 2066.080 kb on - strand, within HP15_1946 at 2066.101 kb on - strand, within HP15_1946 at 2066.108 kb on + strand, within HP15_1946 at 2066.151 kb on + strand, within HP15_1946 at 2066.159 kb on - strand, within HP15_1946 at 2066.177 kb on + strand, within HP15_1946 at 2066.185 kb on - strand, within HP15_1946 at 2066.185 kb on - strand, within HP15_1946 at 2066.248 kb on + strand, within HP15_1946 at 2066.250 kb on - strand, within HP15_1946 at 2066.269 kb on - strand, within HP15_1946 at 2066.302 kb on - strand, within HP15_1946 at 2066.304 kb on + strand, within HP15_1946 at 2066.307 kb on - strand, within HP15_1946 at 2066.309 kb on + strand, within HP15_1946 at 2066.317 kb on - strand, within HP15_1946
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,063,309 + HP15_1944 0.20 -0.2 2,063,358 - HP15_1944 0.25 -0.6 2,063,367 + HP15_1944 0.25 +0.0 2,063,389 - HP15_1944 0.27 -0.6 2,063,415 + HP15_1944 0.30 +0.9 2,063,525 + HP15_1944 0.40 -0.8 2,063,525 + HP15_1944 0.40 +1.7 2,063,525 + HP15_1944 0.40 +0.0 2,063,565 - HP15_1944 0.44 -0.5 2,063,598 - HP15_1944 0.47 +0.1 2,063,717 + HP15_1944 0.58 -0.6 2,063,768 - HP15_1944 0.63 -1.3 2,063,771 + HP15_1944 0.63 -0.8 2,063,789 - HP15_1944 0.65 -0.1 2,063,803 + HP15_1944 0.66 +1.4 2,063,839 + HP15_1944 0.69 -1.6 2,063,847 - HP15_1944 0.70 +1.4 2,063,850 + HP15_1944 0.70 -0.7 2,063,850 + HP15_1944 0.70 -0.2 2,063,953 - HP15_1944 0.80 +1.6 2,064,049 + HP15_1944 0.89 -0.1 2,064,063 - +2.0 2,064,294 + +0.6 2,064,354 - +0.2 2,064,371 + -0.2 2,064,456 + HP15_1945 0.17 -1.6 2,064,545 + HP15_1945 0.25 +1.6 2,064,545 + HP15_1945 0.25 -0.3 2,064,559 + HP15_1945 0.27 -0.7 2,064,577 + HP15_1945 0.28 -1.6 2,064,577 + HP15_1945 0.28 -0.4 2,064,744 - HP15_1945 0.44 -0.7 2,064,744 - HP15_1945 0.44 +0.6 2,064,746 + HP15_1945 0.44 +1.6 2,064,754 - HP15_1945 0.45 +1.6 2,064,758 + HP15_1945 0.45 +0.1 2,064,892 - HP15_1945 0.57 +1.3 2,064,971 - HP15_1945 0.65 +2.4 2,065,115 + HP15_1945 0.78 +1.3 2,065,123 - HP15_1945 0.79 -0.1 2,065,160 + HP15_1945 0.82 +1.4 2,065,160 + HP15_1945 0.82 +1.3 2,065,168 - HP15_1945 0.83 -1.1 2,065,304 + +0.1 2,065,312 - -2.9 2,065,374 - +1.4 2,065,383 + +1.7 2,065,396 - -0.1 2,065,716 + HP15_1946 0.22 -0.1 2,065,734 + HP15_1946 0.24 -1.0 2,065,734 + HP15_1946 0.24 -2.0 2,065,734 + HP15_1946 0.24 -0.2 2,065,742 - HP15_1946 0.25 +0.3 2,065,742 - HP15_1946 0.25 -0.6 2,065,778 + HP15_1946 0.29 +0.5 2,065,791 + HP15_1946 0.30 -1.4 2,065,992 + HP15_1946 0.51 -0.5 2,066,062 + HP15_1946 0.59 -0.2 2,066,080 - HP15_1946 0.61 +1.3 2,066,101 - HP15_1946 0.63 -1.0 2,066,108 + HP15_1946 0.64 -0.4 2,066,151 + HP15_1946 0.68 -0.5 2,066,159 - HP15_1946 0.69 -0.1 2,066,177 + HP15_1946 0.71 -0.9 2,066,185 - HP15_1946 0.72 +1.1 2,066,185 - HP15_1946 0.72 -0.9 2,066,248 + HP15_1946 0.78 +0.2 2,066,250 - HP15_1946 0.79 -0.5 2,066,269 - HP15_1946 0.81 -2.2 2,066,302 - HP15_1946 0.84 -0.8 2,066,304 + HP15_1946 0.84 +0.6 2,066,307 - HP15_1946 0.85 -0.7 2,066,309 + HP15_1946 0.85 -1.1 2,066,317 - HP15_1946 0.86 +0.8
Or see this region's nucleotide sequence