Strain Fitness in Marinobacter adhaerens HP15 around HP15_1928

Experiment: L-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1927 and HP15_1928 are separated by 28 nucleotidesHP15_1928 and HP15_1929 are separated by 33 nucleotides HP15_1927: HP15_1927 - AAA ATPase, at 2,043,797 to 2,044,846 _1927 HP15_1928: HP15_1928 - 2-methylcitrate dehydratase PrpD, at 2,044,875 to 2,046,359 _1928 HP15_1929: HP15_1929 - AcnD-accessory protein PrpF, at 2,046,393 to 2,047,532 _1929 Position (kb) 2044 2045 2046 2047Strain fitness (log2 ratio) -1 0 1 2at 2044.002 kb on - strand, within HP15_1927at 2044.013 kb on - strand, within HP15_1927at 2044.058 kb on + strand, within HP15_1927at 2044.067 kb on - strand, within HP15_1927at 2044.117 kb on - strand, within HP15_1927at 2044.229 kb on - strand, within HP15_1927at 2044.274 kb on - strand, within HP15_1927at 2044.292 kb on - strand, within HP15_1927at 2044.359 kb on + strand, within HP15_1927at 2044.377 kb on + strand, within HP15_1927at 2044.438 kb on + strand, within HP15_1927at 2044.659 kb on + strand, within HP15_1927at 2044.677 kb on - strand, within HP15_1927at 2044.865 kb on + strandat 2044.880 kb on - strandat 2045.230 kb on + strand, within HP15_1928at 2045.736 kb on - strand, within HP15_1928at 2045.760 kb on + strand, within HP15_1928at 2045.913 kb on - strand, within HP15_1928at 2045.960 kb on - strand, within HP15_1928at 2046.094 kb on + strand, within HP15_1928at 2046.104 kb on + strand, within HP15_1928at 2046.188 kb on + strand, within HP15_1928at 2046.212 kb on - strandat 2046.214 kb on + strandat 2046.252 kb on + strandat 2046.252 kb on + strandat 2046.260 kb on - strandat 2046.260 kb on - strandat 2046.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
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2,044,002 - HP15_1927 0.20 -0.1
2,044,013 - HP15_1927 0.21 -0.3
2,044,058 + HP15_1927 0.25 -0.3
2,044,067 - HP15_1927 0.26 -0.1
2,044,117 - HP15_1927 0.30 -0.1
2,044,229 - HP15_1927 0.41 +1.9
2,044,274 - HP15_1927 0.45 -0.6
2,044,292 - HP15_1927 0.47 +0.8
2,044,359 + HP15_1927 0.54 +1.6
2,044,377 + HP15_1927 0.55 -0.5
2,044,438 + HP15_1927 0.61 +0.0
2,044,659 + HP15_1927 0.82 -0.6
2,044,677 - HP15_1927 0.84 -0.4
2,044,865 + -0.1
2,044,880 - -0.2
2,045,230 + HP15_1928 0.24 +0.4
2,045,736 - HP15_1928 0.58 +0.8
2,045,760 + HP15_1928 0.60 +1.4
2,045,913 - HP15_1928 0.70 +0.5
2,045,960 - HP15_1928 0.73 +1.4
2,046,094 + HP15_1928 0.82 +1.9
2,046,104 + HP15_1928 0.83 +2.0
2,046,188 + HP15_1928 0.88 +0.1
2,046,212 - +1.6
2,046,214 + +1.3
2,046,252 + +1.4
2,046,252 + +1.6
2,046,260 - -0.5
2,046,260 - -0.3
2,046,413 - +1.7

Or see this region's nucleotide sequence