Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1918 and HP15_1919 overlap by 1 nucleotides HP15_1919 and HP15_1920 overlap by 7 nucleotides
HP15_1918: HP15_1918 - PEP-CTERM system-associated, FemAB-related protein, at 2,033,508 to 2,034,569
_1918
HP15_1919: HP15_1919 - protein involved in cellulose biosynthesis (CelD)-like protein, at 2,034,569 to 2,035,693
_1919
HP15_1920: HP15_1920 - WalW protein, at 2,035,687 to 2,036,685
_1920
Position (kb)
2034
2035
2036 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2033.685 kb on - strand, within HP15_1918 at 2033.876 kb on - strand, within HP15_1918 at 2033.877 kb on + strand, within HP15_1918 at 2033.936 kb on + strand, within HP15_1918 at 2033.944 kb on - strand, within HP15_1918 at 2034.036 kb on - strand, within HP15_1918 at 2034.176 kb on - strand, within HP15_1918 at 2034.426 kb on + strand, within HP15_1918 at 2034.434 kb on - strand, within HP15_1918 at 2034.513 kb on + strand at 2034.526 kb on + strand at 2034.628 kb on + strand at 2034.628 kb on + strand at 2034.632 kb on + strand at 2034.634 kb on + strand at 2034.636 kb on - strand at 2034.644 kb on + strand at 2034.932 kb on + strand, within HP15_1919 at 2034.940 kb on - strand, within HP15_1919 at 2035.144 kb on + strand, within HP15_1919 at 2035.154 kb on + strand, within HP15_1919 at 2035.197 kb on - strand, within HP15_1919 at 2035.386 kb on - strand, within HP15_1919 at 2035.388 kb on + strand, within HP15_1919 at 2035.480 kb on + strand, within HP15_1919 at 2035.488 kb on - strand, within HP15_1919 at 2035.853 kb on - strand, within HP15_1920 at 2036.018 kb on + strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.195 kb on - strand, within HP15_1920 at 2036.260 kb on - strand, within HP15_1920 at 2036.298 kb on + strand, within HP15_1920 at 2036.551 kb on + strand, within HP15_1920 at 2036.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,033,685 - HP15_1918 0.17 +0.5 2,033,876 - HP15_1918 0.35 +1.7 2,033,877 + HP15_1918 0.35 -0.7 2,033,936 + HP15_1918 0.40 -0.2 2,033,944 - HP15_1918 0.41 -0.9 2,034,036 - HP15_1918 0.50 -0.4 2,034,176 - HP15_1918 0.63 +2.5 2,034,426 + HP15_1918 0.86 +1.4 2,034,434 - HP15_1918 0.87 +1.2 2,034,513 + +0.0 2,034,526 + -0.7 2,034,628 + +1.4 2,034,628 + +0.5 2,034,632 + -2.4 2,034,634 + -1.4 2,034,636 - +2.0 2,034,644 + +2.2 2,034,932 + HP15_1919 0.32 -1.3 2,034,940 - HP15_1919 0.33 -1.2 2,035,144 + HP15_1919 0.51 -0.5 2,035,154 + HP15_1919 0.52 -1.1 2,035,197 - HP15_1919 0.56 +0.5 2,035,386 - HP15_1919 0.73 -0.1 2,035,388 + HP15_1919 0.73 -1.4 2,035,480 + HP15_1919 0.81 +0.2 2,035,488 - HP15_1919 0.82 -1.1 2,035,853 - HP15_1920 0.17 +2.0 2,036,018 + HP15_1920 0.33 -0.8 2,036,031 - HP15_1920 0.34 +2.3 2,036,031 - HP15_1920 0.34 -0.6 2,036,031 - HP15_1920 0.34 -0.8 2,036,195 - HP15_1920 0.51 -0.5 2,036,260 - HP15_1920 0.57 -1.3 2,036,298 + HP15_1920 0.61 -1.0 2,036,551 + HP15_1920 0.86 +0.0 2,036,624 + -0.9
Or see this region's nucleotide sequence