Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1594 and HP15_1595 overlap by 8 nucleotides HP15_1595 and HP15_1596 are separated by 463 nucleotides HP15_1596 and HP15_1597 overlap by 20 nucleotides
HP15_1594: HP15_1594 - hypothetical protein, at 1,688,652 to 1,690,559
_1594
HP15_1595: HP15_1595 - hypothetical protein, at 1,690,552 to 1,690,821
_1595
HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505
_1596
HP15_1597: HP15_1597 - carbohydrate kinase, FGGY, at 1,692,486 to 1,694,045
_1597
Position (kb)
1691
1692
1693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1690.309 kb on - strand, within HP15_1594 at 1690.389 kb on + strand at 1690.452 kb on - strand at 1690.454 kb on - strand at 1690.523 kb on + strand at 1690.639 kb on + strand, within HP15_1595 at 1690.822 kb on - strand at 1690.903 kb on - strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1691.002 kb on - strand at 1691.002 kb on - strand at 1691.002 kb on - strand at 1691.099 kb on + strand at 1691.208 kb on + strand at 1691.312 kb on + strand at 1691.333 kb on + strand at 1691.333 kb on + strand at 1691.341 kb on - strand at 1691.355 kb on + strand at 1691.404 kb on - strand at 1691.446 kb on + strand, within HP15_1596 at 1691.478 kb on - strand, within HP15_1596 at 1691.528 kb on - strand, within HP15_1596 at 1691.585 kb on + strand, within HP15_1596 at 1691.593 kb on - strand, within HP15_1596 at 1691.792 kb on - strand, within HP15_1596 at 1691.972 kb on + strand, within HP15_1596 at 1692.034 kb on - strand, within HP15_1596 at 1692.293 kb on - strand, within HP15_1596 at 1692.335 kb on + strand, within HP15_1596 at 1692.343 kb on - strand, within HP15_1596 at 1692.385 kb on + strand at 1692.462 kb on + strand at 1692.467 kb on + strand at 1692.469 kb on + strand at 1692.529 kb on + strand at 1692.541 kb on + strand at 1692.665 kb on + strand, within HP15_1597 at 1692.673 kb on - strand, within HP15_1597 at 1692.875 kb on - strand, within HP15_1597 at 1692.906 kb on + strand, within HP15_1597 at 1692.914 kb on - strand, within HP15_1597 at 1692.914 kb on - strand, within HP15_1597 at 1693.018 kb on + strand, within HP15_1597 at 1693.018 kb on + strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.135 kb on + strand, within HP15_1597 at 1693.143 kb on - strand, within HP15_1597 at 1693.204 kb on + strand, within HP15_1597 at 1693.344 kb on + strand, within HP15_1597 at 1693.382 kb on + strand, within HP15_1597
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 1,690,309 - HP15_1594 0.87 -0.5 1,690,389 + -0.3 1,690,452 - -0.5 1,690,454 - +0.6 1,690,523 + +0.1 1,690,639 + HP15_1595 0.32 -1.4 1,690,822 - +1.8 1,690,903 - +0.1 1,690,994 + -1.0 1,690,994 + -1.3 1,690,994 + -1.8 1,690,994 + -0.1 1,691,002 - +1.2 1,691,002 - -2.6 1,691,002 - -3.0 1,691,099 + +0.2 1,691,208 + +0.1 1,691,312 + -0.2 1,691,333 + -0.1 1,691,333 + -1.7 1,691,341 - -1.6 1,691,355 + +0.1 1,691,404 - +0.1 1,691,446 + HP15_1596 0.13 -2.1 1,691,478 - HP15_1596 0.16 -3.7 1,691,528 - HP15_1596 0.20 +0.3 1,691,585 + HP15_1596 0.25 +0.3 1,691,593 - HP15_1596 0.25 -3.6 1,691,792 - HP15_1596 0.42 -2.0 1,691,972 + HP15_1596 0.56 +0.1 1,692,034 - HP15_1596 0.61 -2.8 1,692,293 - HP15_1596 0.83 +0.9 1,692,335 + HP15_1596 0.86 -3.1 1,692,343 - HP15_1596 0.87 -3.4 1,692,385 + -0.3 1,692,462 + -0.7 1,692,467 + +0.8 1,692,469 + +1.0 1,692,529 + -2.3 1,692,541 + -1.1 1,692,665 + HP15_1597 0.11 -0.7 1,692,673 - HP15_1597 0.12 -1.1 1,692,875 - HP15_1597 0.25 +0.1 1,692,906 + HP15_1597 0.27 +2.0 1,692,914 - HP15_1597 0.27 +0.2 1,692,914 - HP15_1597 0.27 +2.0 1,693,018 + HP15_1597 0.34 +2.2 1,693,018 + HP15_1597 0.34 -0.4 1,693,026 - HP15_1597 0.35 -0.8 1,693,026 - HP15_1597 0.35 +1.5 1,693,026 - HP15_1597 0.35 +2.6 1,693,026 - HP15_1597 0.35 -0.3 1,693,135 + HP15_1597 0.42 +1.4 1,693,143 - HP15_1597 0.42 -0.6 1,693,204 + HP15_1597 0.46 +1.7 1,693,344 + HP15_1597 0.55 -1.1 1,693,382 + HP15_1597 0.57 +0.2
Or see this region's nucleotide sequence