Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1202 and HP15_1203 are separated by 639 nucleotides HP15_1203 and HP15_1204 are separated by 252 nucleotides
HP15_1202: HP15_1202 - large ATP-binding protein, at 1,241,365 to 1,243,338
_1202
HP15_1203: HP15_1203 - methyltransferase, at 1,243,978 to 1,245,054
_1203
HP15_1204: HP15_1204 - conserved hypothetical protein, at 1,245,307 to 1,246,170
_1204
Position (kb)
1243
1244
1245
1246 Strain fitness (log2 ratio)
-1
0
1
2 at 1242.992 kb on + strand, within HP15_1202 at 1243.159 kb on + strand at 1243.161 kb on + strand at 1243.166 kb on + strand at 1243.511 kb on - strand at 1243.539 kb on - strand at 1243.565 kb on - strand at 1243.583 kb on - strand at 1243.629 kb on + strand at 1243.754 kb on + strand at 1243.784 kb on - strand at 1244.020 kb on - strand at 1244.163 kb on - strand, within HP15_1203 at 1244.281 kb on - strand, within HP15_1203 at 1244.298 kb on + strand, within HP15_1203 at 1244.357 kb on - strand, within HP15_1203 at 1244.425 kb on - strand, within HP15_1203 at 1244.446 kb on + strand, within HP15_1203 at 1244.554 kb on + strand, within HP15_1203 at 1244.944 kb on - strand, within HP15_1203 at 1244.944 kb on - strand, within HP15_1203 at 1244.986 kb on + strand at 1245.013 kb on + strand at 1245.083 kb on - strand at 1245.143 kb on + strand at 1245.205 kb on + strand at 1245.213 kb on - strand at 1245.259 kb on - strand at 1245.340 kb on + strand at 1245.529 kb on - strand, within HP15_1204 at 1245.576 kb on + strand, within HP15_1204 at 1245.604 kb on - strand, within HP15_1204 at 1245.645 kb on + strand, within HP15_1204 at 1245.874 kb on + strand, within HP15_1204 at 1245.884 kb on + strand, within HP15_1204 at 1245.892 kb on - strand, within HP15_1204 at 1245.892 kb on - strand, within HP15_1204 at 1245.939 kb on + strand, within HP15_1204 at 1245.961 kb on - strand, within HP15_1204 at 1246.048 kb on - strand, within HP15_1204
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 1,242,992 + HP15_1202 0.82 -0.2 1,243,159 + -0.0 1,243,161 + +0.3 1,243,166 + -0.3 1,243,511 - -0.3 1,243,539 - -0.7 1,243,565 - -0.4 1,243,583 - -0.3 1,243,629 + +0.7 1,243,754 + -0.4 1,243,784 - -0.3 1,244,020 - -1.5 1,244,163 - HP15_1203 0.17 +1.1 1,244,281 - HP15_1203 0.28 -1.1 1,244,298 + HP15_1203 0.30 -0.9 1,244,357 - HP15_1203 0.35 -0.0 1,244,425 - HP15_1203 0.42 -0.2 1,244,446 + HP15_1203 0.43 -0.0 1,244,554 + HP15_1203 0.53 +0.1 1,244,944 - HP15_1203 0.90 -0.4 1,244,944 - HP15_1203 0.90 -0.3 1,244,986 + +1.6 1,245,013 + -0.6 1,245,083 - +1.9 1,245,143 + +0.4 1,245,205 + +2.4 1,245,213 - -0.6 1,245,259 - -0.2 1,245,340 + +0.8 1,245,529 - HP15_1204 0.26 -0.5 1,245,576 + HP15_1204 0.31 -0.2 1,245,604 - HP15_1204 0.34 -0.8 1,245,645 + HP15_1204 0.39 -0.2 1,245,874 + HP15_1204 0.66 -0.4 1,245,884 + HP15_1204 0.67 -0.4 1,245,892 - HP15_1204 0.68 +0.6 1,245,892 - HP15_1204 0.68 +1.1 1,245,939 + HP15_1204 0.73 -0.5 1,245,961 - HP15_1204 0.76 -0.6 1,246,048 - HP15_1204 0.86 -1.0
Or see this region's nucleotide sequence