Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4013 and Shewana3_4014 are separated by 129 nucleotides Shewana3_4014 and Shewana3_4015 are separated by 58 nucleotides
Shewana3_4013: Shewana3_4013 - RNA-binding S1 domain-containing protein (RefSeq), at 4,817,460 to 4,819,799
_4013
Shewana3_4014: Shewana3_4014 - transcription elongation factor GreB (RefSeq), at 4,819,929 to 4,820,432
_4014
Shewana3_4015: Shewana3_4015 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 4,820,491 to 4,821,438
_4015
Position (kb)
4819
4820
4821 Strain fitness (log2 ratio)
-2
-1
0
1 at 4818.987 kb on - strand, within Shewana3_4013 at 4818.987 kb on - strand, within Shewana3_4013 at 4818.989 kb on - strand, within Shewana3_4013 at 4818.992 kb on + strand, within Shewana3_4013 at 4819.000 kb on - strand, within Shewana3_4013 at 4819.056 kb on + strand, within Shewana3_4013 at 4819.056 kb on + strand, within Shewana3_4013 at 4819.064 kb on - strand, within Shewana3_4013 at 4819.235 kb on + strand, within Shewana3_4013 at 4819.253 kb on - strand, within Shewana3_4013 at 4819.488 kb on - strand, within Shewana3_4013 at 4819.621 kb on - strand at 4819.632 kb on + strand at 4819.658 kb on + strand at 4819.679 kb on + strand at 4819.706 kb on + strand at 4819.928 kb on - strand at 4820.024 kb on + strand, within Shewana3_4014 at 4820.054 kb on - strand, within Shewana3_4014 at 4820.583 kb on + strand at 4820.693 kb on + strand, within Shewana3_4015 at 4820.725 kb on - strand, within Shewana3_4015 at 4820.735 kb on - strand, within Shewana3_4015 at 4821.155 kb on + strand, within Shewana3_4015 at 4821.303 kb on - strand, within Shewana3_4015
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,818,987 - Shewana3_4013 0.65 +0.5 4,818,987 - Shewana3_4013 0.65 +1.2 4,818,989 - Shewana3_4013 0.65 -1.6 4,818,992 + Shewana3_4013 0.65 +0.3 4,819,000 - Shewana3_4013 0.66 -1.8 4,819,056 + Shewana3_4013 0.68 -2.3 4,819,056 + Shewana3_4013 0.68 -0.2 4,819,064 - Shewana3_4013 0.69 -1.1 4,819,235 + Shewana3_4013 0.76 -1.7 4,819,253 - Shewana3_4013 0.77 -1.4 4,819,488 - Shewana3_4013 0.87 -1.7 4,819,621 - +0.5 4,819,632 + -0.1 4,819,658 + +0.4 4,819,679 + -0.1 4,819,706 + -0.3 4,819,928 - +1.1 4,820,024 + Shewana3_4014 0.19 +0.1 4,820,054 - Shewana3_4014 0.25 +0.3 4,820,583 + -0.1 4,820,693 + Shewana3_4015 0.21 +0.4 4,820,725 - Shewana3_4015 0.25 +0.3 4,820,735 - Shewana3_4015 0.26 +1.0 4,821,155 + Shewana3_4015 0.70 +0.1 4,821,303 - Shewana3_4015 0.86 +0.0
Or see this region's nucleotide sequence