Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3510

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3509 and Shewana3_3510 are separated by 290 nucleotidesShewana3_3510 and Shewana3_3511 are separated by 223 nucleotidesShewana3_3511 and Shewana3_3512 are separated by 103 nucleotides Shewana3_3509: Shewana3_3509 - malate dehydrogenase (RefSeq), at 4,209,397 to 4,210,332 _3509 Shewana3_3510: Shewana3_3510 - arginine repressor (RefSeq), at 4,210,623 to 4,211,093 _3510 Shewana3_3511: Shewana3_3511 - NAD-dependent epimerase/dehydratase (RefSeq), at 4,211,317 to 4,211,949 _3511 Shewana3_3512: Shewana3_3512 - transcriptional regulator (RefSeq), at 4,212,053 to 4,212,955 _3512 Position (kb) 4210 4211 4212Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4209.650 kb on + strand, within Shewana3_3509at 4209.991 kb on + strand, within Shewana3_3509at 4210.083 kb on - strand, within Shewana3_3509at 4210.129 kb on + strand, within Shewana3_3509at 4210.312 kb on + strandat 4210.326 kb on + strandat 4210.452 kb on + strandat 4210.522 kb on - strandat 4210.613 kb on + strandat 4210.621 kb on - strandat 4210.818 kb on + strand, within Shewana3_3510at 4210.919 kb on + strand, within Shewana3_3510at 4210.924 kb on + strand, within Shewana3_3510at 4210.937 kb on + strand, within Shewana3_3510at 4211.123 kb on + strandat 4211.259 kb on + strandat 4211.386 kb on - strand, within Shewana3_3511at 4211.563 kb on + strand, within Shewana3_3511at 4211.625 kb on + strand, within Shewana3_3511at 4211.805 kb on + strand, within Shewana3_3511at 4211.805 kb on + strand, within Shewana3_3511at 4211.871 kb on + strand, within Shewana3_3511at 4211.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,209,650 + Shewana3_3509 0.27 -5.0
4,209,991 + Shewana3_3509 0.63 -5.0
4,210,083 - Shewana3_3509 0.73 -3.7
4,210,129 + Shewana3_3509 0.78 -1.4
4,210,312 + -3.6
4,210,326 + -4.3
4,210,452 + -1.4
4,210,522 - -1.4
4,210,613 + -0.5
4,210,621 - +0.5
4,210,818 + Shewana3_3510 0.41 -2.2
4,210,919 + Shewana3_3510 0.63 -1.2
4,210,924 + Shewana3_3510 0.64 +0.6
4,210,937 + Shewana3_3510 0.67 +0.6
4,211,123 + -1.1
4,211,259 + +0.1
4,211,386 - Shewana3_3511 0.11 -1.5
4,211,563 + Shewana3_3511 0.39 +0.8
4,211,625 + Shewana3_3511 0.49 -0.0
4,211,805 + Shewana3_3511 0.77 +0.4
4,211,805 + Shewana3_3511 0.77 -0.7
4,211,871 + Shewana3_3511 0.88 -0.6
4,211,930 + -2.4

Or see this region's nucleotide sequence