Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0117

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3087 and Shewana3_R0117 are separated by 289 nucleotidesShewana3_R0117 and Shewana3_3088 are separated by 227 nucleotides Shewana3_3087: Shewana3_3087 - RNA polymerase, sigma 70 subunit, RpoD (RefSeq), at 3,699,560 to 3,701,419 _3087 Shewana3_R0117: Shewana3_R0117 - tRNA-Met (RefSeq), at 3,701,709 to 3,701,785 _R0117 Shewana3_3088: Shewana3_3088 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,702,013 to 3,704,133 _3088 Position (kb) 3701 3702Strain fitness (log2 ratio) -1 0 1at 3701.881 kb on + strandat 3701.996 kb on + strandat 3701.996 kb on + strandat 3701.996 kb on + strandat 3701.996 kb on + strandat 3701.996 kb on + strandat 3702.004 kb on - strandat 3702.004 kb on - strandat 3702.004 kb on - strandat 3702.004 kb on - strandat 3702.004 kb on - strandat 3702.076 kb on + strandat 3702.298 kb on + strand, within Shewana3_3088at 3702.354 kb on - strand, within Shewana3_3088at 3702.644 kb on - strand, within Shewana3_3088

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,701,881 + +0.9
3,701,996 + -0.2
3,701,996 + +0.9
3,701,996 + +0.4
3,701,996 + +0.3
3,701,996 + -1.7
3,702,004 - -0.1
3,702,004 - +0.3
3,702,004 - +0.3
3,702,004 - +0.4
3,702,004 - -0.0
3,702,076 + +0.8
3,702,298 + Shewana3_3088 0.13 +0.1
3,702,354 - Shewana3_3088 0.16 +0.2
3,702,644 - Shewana3_3088 0.30 +0.6

Or see this region's nucleotide sequence