Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3071

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3070 and Shewana3_3071 are separated by 27 nucleotidesShewana3_3071 and Shewana3_3072 are separated by 86 nucleotidesShewana3_3072 and Shewana3_3073 are separated by 470 nucleotides Shewana3_3070: Shewana3_3070 - aspartate carbamoyltransferase (RefSeq), at 3,682,211 to 3,683,230 _3070 Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550 _3071 Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834 _3072 Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615 _3073 Position (kb) 3683 3684 3685Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3682.334 kb on - strand, within Shewana3_3070at 3682.379 kb on + strand, within Shewana3_3070at 3682.394 kb on + strand, within Shewana3_3070at 3682.576 kb on - strand, within Shewana3_3070at 3682.658 kb on + strand, within Shewana3_3070at 3682.809 kb on + strand, within Shewana3_3070at 3683.020 kb on + strand, within Shewana3_3070at 3683.063 kb on + strand, within Shewana3_3070at 3684.557 kb on + strandat 3684.732 kb on + strand, within Shewana3_3072at 3685.280 kb on - strandat 3685.501 kb on - strand, within Shewana3_3073

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,682,334 - Shewana3_3070 0.12 -4.5
3,682,379 + Shewana3_3070 0.16 -4.2
3,682,394 + Shewana3_3070 0.18 -4.8
3,682,576 - Shewana3_3070 0.36 -4.9
3,682,658 + Shewana3_3070 0.44 -3.5
3,682,809 + Shewana3_3070 0.59 -4.7
3,683,020 + Shewana3_3070 0.79 -5.9
3,683,063 + Shewana3_3070 0.84 -3.1
3,684,557 + -1.8
3,684,732 + Shewana3_3072 0.48 -0.6
3,685,280 - -3.5
3,685,501 - Shewana3_3073 0.15 -1.0

Or see this region's nucleotide sequence