Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2943

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2942 and Shewana3_2943 are separated by 143 nucleotidesShewana3_2943 and Shewana3_2944 are separated by 835 nucleotides Shewana3_2942: Shewana3_2942 - isocitrate lyase (RefSeq), at 3,531,910 to 3,533,232 _2942 Shewana3_2943: Shewana3_2943 - malate synthase (RefSeq), at 3,533,376 to 3,535,025 _2943 Shewana3_2944: Shewana3_2944 - TonB-dependent receptor (RefSeq), at 3,535,861 to 3,538,332 _2944 Position (kb) 3533 3534 3535 3536Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3532.413 kb on - strand, within Shewana3_2942at 3532.605 kb on - strand, within Shewana3_2942at 3532.712 kb on + strand, within Shewana3_2942at 3532.807 kb on - strand, within Shewana3_2942at 3533.124 kb on + strandat 3533.132 kb on + strandat 3533.140 kb on - strandat 3533.205 kb on + strandat 3533.230 kb on - strandat 3533.290 kb on - strandat 3533.290 kb on - strandat 3533.294 kb on - strandat 3533.494 kb on - strandat 3533.539 kb on + strandat 3533.571 kb on - strand, within Shewana3_2943at 3533.802 kb on + strand, within Shewana3_2943at 3533.887 kb on + strand, within Shewana3_2943at 3533.958 kb on + strand, within Shewana3_2943at 3534.160 kb on + strand, within Shewana3_2943at 3534.588 kb on - strand, within Shewana3_2943at 3534.589 kb on - strand, within Shewana3_2943at 3534.973 kb on + strandat 3535.449 kb on + strandat 3535.924 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
3,532,413 - Shewana3_2942 0.38 -3.0
3,532,605 - Shewana3_2942 0.53 -3.4
3,532,712 + Shewana3_2942 0.61 -4.3
3,532,807 - Shewana3_2942 0.68 -4.2
3,533,124 + -4.1
3,533,132 + -3.9
3,533,140 - -5.7
3,533,205 + -5.1
3,533,230 - -4.1
3,533,290 - -2.5
3,533,290 - -3.2
3,533,294 - -4.1
3,533,494 - -4.8
3,533,539 + -2.8
3,533,571 - Shewana3_2943 0.12 -5.7
3,533,802 + Shewana3_2943 0.26 -5.2
3,533,887 + Shewana3_2943 0.31 -3.2
3,533,958 + Shewana3_2943 0.35 -2.1
3,534,160 + Shewana3_2943 0.48 -2.4
3,534,588 - Shewana3_2943 0.73 -3.1
3,534,589 - Shewana3_2943 0.74 -4.5
3,534,973 + -2.5
3,535,449 + -2.4
3,535,924 - +0.2

Or see this region's nucleotide sequence