Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2901

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2899 and Shewana3_2900 are separated by 2 nucleotidesShewana3_2900 and Shewana3_2901 are separated by 21 nucleotidesShewana3_2901 and Shewana3_2902 are separated by 147 nucleotidesShewana3_2902 and ppnK are separated by 48 nucleotides Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064 _2899 Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948 _2900 Shewana3_2901: Shewana3_2901 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,469,970 to 3,471,838 _2901 Shewana3_2902: Shewana3_2902 - GrpE protein (RefSeq), at 3,471,986 to 3,472,606 _2902 Shewana3_2903: ppnK - inorganic polyphosphate/ATP-NAD kinase (RefSeq), at 3,472,655 to 3,473,584 ppnK Position (kb) 3469 3470 3471 3472Strain fitness (log2 ratio) -1 0 1at 3469.055 kb on + strandat 3471.858 kb on + strandat 3471.868 kb on + strandat 3472.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,469,055 + +0.7
3,471,858 + +0.4
3,471,868 + +0.1
3,472,681 + +1.2

Or see this region's nucleotide sequence