Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2583

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2580 and Shewana3_2581 are separated by 165 nucleotidesShewana3_2581 and Shewana3_2582 are separated by 130 nucleotidesShewana3_2582 and lpxK overlap by 11 nucleotideslpxK and Shewana3_2584 are separated by 0 nucleotides Shewana3_2580: Shewana3_2580 - hypothetical protein (RefSeq), at 3,084,815 to 3,085,504 _2580 Shewana3_2581: Shewana3_2581 - putative lipoprotein (RefSeq), at 3,085,670 to 3,086,134 _2581 Shewana3_2582: Shewana3_2582 - hypothetical protein (RefSeq), at 3,086,265 to 3,086,444 _2582 Shewana3_2583: lpxK - tetraacyldisaccharide 4'-kinase (RefSeq), at 3,086,434 to 3,087,441 lpxK Shewana3_2584: Shewana3_2584 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 3,087,442 to 3,089,244 _2584 Position (kb) 3086 3087 3088Strain fitness (log2 ratio) -1 0 1at 3085.574 kb on - strandat 3085.664 kb on - strandat 3085.707 kb on + strandat 3085.803 kb on + strand, within Shewana3_2581at 3085.940 kb on - strand, within Shewana3_2581at 3086.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,085,574 - +1.1
3,085,664 - +0.1
3,085,707 + -1.3
3,085,803 + Shewana3_2581 0.29 +0.8
3,085,940 - Shewana3_2581 0.58 +0.3
3,086,128 + -1.2

Or see this region's nucleotide sequence