Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2336 and Shewana3_2337 are separated by 95 nucleotides Shewana3_2337 and Shewana3_2338 are separated by 244 nucleotides Shewana3_2338 and Shewana3_2339 are separated by 129 nucleotides
Shewana3_2336: Shewana3_2336 - protein tyrosine phosphatase (RefSeq), at 2,810,738 to 2,811,154
_2336
Shewana3_2337: Shewana3_2337 - ArsR family transcriptional regulator (RefSeq), at 2,811,250 to 2,811,537
_2337
Shewana3_2338: Shewana3_2338 - permease (RefSeq), at 2,811,782 to 2,812,858
_2338
Shewana3_2339: Shewana3_2339 - glutathione synthase (RefSeq), at 2,812,988 to 2,814,445
_2339
Position (kb)
2811
2812
2813 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2810.804 kb on + strand, within Shewana3_2336 at 2810.855 kb on - strand, within Shewana3_2336 at 2811.036 kb on + strand at 2811.244 kb on - strand at 2811.417 kb on - strand, within Shewana3_2337 at 2811.485 kb on - strand, within Shewana3_2337 at 2811.629 kb on + strand at 2811.656 kb on - strand at 2811.848 kb on - strand at 2811.949 kb on + strand, within Shewana3_2338 at 2812.157 kb on + strand, within Shewana3_2338 at 2812.228 kb on + strand, within Shewana3_2338 at 2812.639 kb on - strand, within Shewana3_2338 at 2812.835 kb on + strand at 2812.910 kb on - strand at 2812.922 kb on + strand at 2813.429 kb on - strand, within Shewana3_2339 at 2813.469 kb on + strand, within Shewana3_2339 at 2813.738 kb on - strand, within Shewana3_2339
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,810,804 + Shewana3_2336 0.16 -2.2 2,810,855 - Shewana3_2336 0.28 -3.6 2,811,036 + +1.7 2,811,244 - +0.4 2,811,417 - Shewana3_2337 0.58 -0.6 2,811,485 - Shewana3_2337 0.82 -1.3 2,811,629 + -0.7 2,811,656 - +0.3 2,811,848 - -0.1 2,811,949 + Shewana3_2338 0.16 +0.4 2,812,157 + Shewana3_2338 0.35 +0.8 2,812,228 + Shewana3_2338 0.41 -2.1 2,812,639 - Shewana3_2338 0.80 -1.5 2,812,835 + -1.4 2,812,910 - +0.2 2,812,922 + +0.6 2,813,429 - Shewana3_2339 0.30 +1.3 2,813,469 + Shewana3_2339 0.33 +1.1 2,813,738 - Shewana3_2339 0.51 +0.3
Or see this region's nucleotide sequence