Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2115

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2112 and Shewana3_2113 are separated by 19 nucleotidesShewana3_2113 and Shewana3_2114 are separated by 8 nucleotidesShewana3_2114 and Shewana3_2115 are separated by 55 nucleotidesShewana3_2115 and Shewana3_2116 are separated by 142 nucleotides Shewana3_2112: Shewana3_2112 - heavy metal translocating P-type ATPase (RefSeq), at 2,535,414 to 2,537,825 _2112 Shewana3_2113: Shewana3_2113 - cytochrome oxidase maturation protein, cbb3-type (RefSeq), at 2,537,845 to 2,538,045 _2113 Shewana3_2114: Shewana3_2114 - hypothetical protein (RefSeq), at 2,538,054 to 2,538,746 _2114 Shewana3_2115: Shewana3_2115 - fumarate/nitrate reduction transcriptional regulator (RefSeq), at 2,538,802 to 2,539,554 _2115 Shewana3_2116: Shewana3_2116 - universal stress protein UspE (RefSeq), at 2,539,697 to 2,540,629 _2116 Position (kb) 2538 2539 2540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2538.031 kb on + strandat 2538.163 kb on + strand, within Shewana3_2114at 2538.387 kb on + strand, within Shewana3_2114at 2538.516 kb on - strand, within Shewana3_2114at 2538.536 kb on - strand, within Shewana3_2114at 2538.748 kb on - strandat 2539.154 kb on + strand, within Shewana3_2115at 2539.554 kb on + strandat 2539.666 kb on + strandat 2540.386 kb on - strand, within Shewana3_2116

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,538,031 + -3.6
2,538,163 + Shewana3_2114 0.16 -1.5
2,538,387 + Shewana3_2114 0.48 -3.5
2,538,516 - Shewana3_2114 0.67 -4.2
2,538,536 - Shewana3_2114 0.70 -2.2
2,538,748 - -1.6
2,539,154 + Shewana3_2115 0.47 -0.3
2,539,554 + -1.5
2,539,666 + -1.2
2,540,386 - Shewana3_2116 0.74 -1.6

Or see this region's nucleotide sequence