Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1982

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1980 and Shewana3_1981 are separated by 42 nucleotidesShewana3_1981 and Shewana3_1982 are separated by 72 nucleotidesShewana3_1982 and Shewana3_1983 are separated by 59 nucleotidesShewana3_1983 and Shewana3_1984 are separated by 217 nucleotides Shewana3_1980: Shewana3_1980 - tetratricopeptide repeat protein (RefSeq), at 2,358,326 to 2,359,486 _1980 Shewana3_1981: Shewana3_1981 - orotidine 5'-phosphate decarboxylase (RefSeq), at 2,359,529 to 2,360,224 _1981 Shewana3_1982: Shewana3_1982 - short chain dehydrogenase (RefSeq), at 2,360,297 to 2,361,124 _1982 Shewana3_1983: Shewana3_1983 - hypothetical protein (RefSeq), at 2,361,184 to 2,361,726 _1983 Shewana3_1984: Shewana3_1984 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 2,361,944 to 2,363,701 _1984 Position (kb) 2360 2361 2362Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2359.707 kb on + strand, within Shewana3_1981at 2360.093 kb on + strand, within Shewana3_1981at 2360.475 kb on - strand, within Shewana3_1982at 2360.536 kb on - strand, within Shewana3_1982at 2360.969 kb on + strand, within Shewana3_1982at 2361.043 kb on - strandat 2361.210 kb on + strandat 2361.210 kb on + strandat 2361.210 kb on + strandat 2361.462 kb on + strand, within Shewana3_1983at 2361.550 kb on - strand, within Shewana3_1983at 2361.568 kb on + strand, within Shewana3_1983at 2362.100 kb on + strandat 2362.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,359,707 + Shewana3_1981 0.26 -5.1
2,360,093 + Shewana3_1981 0.81 -4.5
2,360,475 - Shewana3_1982 0.21 +0.9
2,360,536 - Shewana3_1982 0.29 -0.2
2,360,969 + Shewana3_1982 0.81 -1.6
2,361,043 - +0.3
2,361,210 + +0.5
2,361,210 + -0.5
2,361,210 + +1.3
2,361,462 + Shewana3_1983 0.51 +0.2
2,361,550 - Shewana3_1983 0.67 +1.3
2,361,568 + Shewana3_1983 0.71 +0.5
2,362,100 + +0.4
2,362,112 + +1.5

Or see this region's nucleotide sequence