Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1929

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1927 and Shewana3_1928 are separated by 47 nucleotidesShewana3_1928 and Shewana3_1929 are separated by 205 nucleotidesShewana3_1929 and Shewana3_1930 are separated by 36 nucleotides Shewana3_1927: Shewana3_1927 - GCN5-related N-acetyltransferase (RefSeq), at 2,292,511 to 2,292,987 _1927 Shewana3_1928: Shewana3_1928 - hypothetical protein (RefSeq), at 2,293,035 to 2,293,550 _1928 Shewana3_1929: Shewana3_1929 - alkylhydroperoxidase (RefSeq), at 2,293,756 to 2,294,205 _1929 Shewana3_1930: Shewana3_1930 - AraC family transcriptional regulator (RefSeq), at 2,294,242 to 2,295,132 _1930 Position (kb) 2293 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1at 2292.769 kb on + strand, within Shewana3_1927at 2293.173 kb on + strand, within Shewana3_1928at 2293.173 kb on + strand, within Shewana3_1928at 2293.173 kb on + strand, within Shewana3_1928at 2293.181 kb on - strand, within Shewana3_1928at 2293.233 kb on + strand, within Shewana3_1928at 2293.241 kb on - strand, within Shewana3_1928at 2293.277 kb on + strand, within Shewana3_1928at 2293.387 kb on + strand, within Shewana3_1928at 2293.488 kb on + strand, within Shewana3_1928at 2293.764 kb on + strandat 2294.126 kb on + strand, within Shewana3_1929at 2294.137 kb on + strand, within Shewana3_1929at 2294.601 kb on - strand, within Shewana3_1930at 2294.652 kb on + strand, within Shewana3_1930at 2294.746 kb on - strand, within Shewana3_1930at 2294.844 kb on - strand, within Shewana3_1930at 2294.985 kb on + strand, within Shewana3_1930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
2,292,769 + Shewana3_1927 0.54 -1.7
2,293,173 + Shewana3_1928 0.27 +0.4
2,293,173 + Shewana3_1928 0.27 -1.2
2,293,173 + Shewana3_1928 0.27 +0.4
2,293,181 - Shewana3_1928 0.28 +0.9
2,293,233 + Shewana3_1928 0.38 +0.4
2,293,241 - Shewana3_1928 0.40 -3.5
2,293,277 + Shewana3_1928 0.47 +0.2
2,293,387 + Shewana3_1928 0.68 -1.4
2,293,488 + Shewana3_1928 0.88 +0.1
2,293,764 + -0.3
2,294,126 + Shewana3_1929 0.82 +0.9
2,294,137 + Shewana3_1929 0.85 -1.2
2,294,601 - Shewana3_1930 0.40 -1.6
2,294,652 + Shewana3_1930 0.46 -1.2
2,294,746 - Shewana3_1930 0.57 -1.4
2,294,844 - Shewana3_1930 0.68 -0.1
2,294,985 + Shewana3_1930 0.83 -1.6

Or see this region's nucleotide sequence