Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1926 and Shewana3_1927 are separated by 27 nucleotides Shewana3_1927 and Shewana3_1928 are separated by 47 nucleotides Shewana3_1928 and Shewana3_1929 are separated by 205 nucleotides Shewana3_1929 and Shewana3_1930 are separated by 36 nucleotides
Shewana3_1926: Shewana3_1926 - YCII-related (RefSeq), at 2,292,205 to 2,292,483
_1926
Shewana3_1927: Shewana3_1927 - GCN5-related N-acetyltransferase (RefSeq), at 2,292,511 to 2,292,987
_1927
Shewana3_1928: Shewana3_1928 - hypothetical protein (RefSeq), at 2,293,035 to 2,293,550
_1928
Shewana3_1929: Shewana3_1929 - alkylhydroperoxidase (RefSeq), at 2,293,756 to 2,294,205
_1929
Shewana3_1930: Shewana3_1930 - AraC family transcriptional regulator (RefSeq), at 2,294,242 to 2,295,132
_1930
Position (kb)
2293
2294 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2292.109 kb on + strand at 2292.127 kb on - strand at 2292.190 kb on + strand at 2292.253 kb on - strand, within Shewana3_1926 at 2292.527 kb on + strand at 2292.665 kb on - strand, within Shewana3_1927 at 2292.769 kb on + strand, within Shewana3_1927 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.181 kb on - strand, within Shewana3_1928 at 2293.233 kb on + strand, within Shewana3_1928 at 2293.241 kb on - strand, within Shewana3_1928 at 2293.277 kb on + strand, within Shewana3_1928 at 2293.387 kb on + strand, within Shewana3_1928 at 2293.488 kb on + strand, within Shewana3_1928 at 2293.764 kb on + strand at 2294.126 kb on + strand, within Shewana3_1929 at 2294.137 kb on + strand, within Shewana3_1929
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,292,109 + +0.2 2,292,127 - -1.5 2,292,190 + -1.5 2,292,253 - Shewana3_1926 0.17 +0.2 2,292,527 + +0.8 2,292,665 - Shewana3_1927 0.32 -1.3 2,292,769 + Shewana3_1927 0.54 -1.7 2,293,173 + Shewana3_1928 0.27 +0.4 2,293,173 + Shewana3_1928 0.27 -1.2 2,293,173 + Shewana3_1928 0.27 +0.4 2,293,181 - Shewana3_1928 0.28 +0.9 2,293,233 + Shewana3_1928 0.38 +0.4 2,293,241 - Shewana3_1928 0.40 -3.5 2,293,277 + Shewana3_1928 0.47 +0.2 2,293,387 + Shewana3_1928 0.68 -1.4 2,293,488 + Shewana3_1928 0.88 +0.1 2,293,764 + -0.3 2,294,126 + Shewana3_1929 0.82 +0.9 2,294,137 + Shewana3_1929 0.85 -1.2
Or see this region's nucleotide sequence