Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1926 and Shewana3_1927 are separated by 27 nucleotides Shewana3_1927 and Shewana3_1928 are separated by 47 nucleotides Shewana3_1928 and Shewana3_1929 are separated by 205 nucleotides
Shewana3_1926: Shewana3_1926 - YCII-related (RefSeq), at 2,292,205 to 2,292,483
_1926
Shewana3_1927: Shewana3_1927 - GCN5-related N-acetyltransferase (RefSeq), at 2,292,511 to 2,292,987
_1927
Shewana3_1928: Shewana3_1928 - hypothetical protein (RefSeq), at 2,293,035 to 2,293,550
_1928
Shewana3_1929: Shewana3_1929 - alkylhydroperoxidase (RefSeq), at 2,293,756 to 2,294,205
_1929
Position (kb)
2292
2293 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2291.713 kb on + strand at 2291.742 kb on + strand at 2291.752 kb on + strand at 2291.760 kb on - strand at 2291.873 kb on + strand at 2291.910 kb on + strand at 2291.911 kb on + strand at 2291.918 kb on - strand at 2291.918 kb on - strand at 2292.109 kb on + strand at 2292.127 kb on - strand at 2292.190 kb on + strand at 2292.253 kb on - strand, within Shewana3_1926 at 2292.527 kb on + strand at 2292.665 kb on - strand, within Shewana3_1927 at 2292.769 kb on + strand, within Shewana3_1927 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.181 kb on - strand, within Shewana3_1928 at 2293.233 kb on + strand, within Shewana3_1928 at 2293.241 kb on - strand, within Shewana3_1928 at 2293.277 kb on + strand, within Shewana3_1928 at 2293.387 kb on + strand, within Shewana3_1928 at 2293.488 kb on + strand, within Shewana3_1928 at 2293.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,291,713 + +0.2 2,291,742 + -1.2 2,291,752 + +0.6 2,291,760 - -0.1 2,291,873 + +1.5 2,291,910 + -1.1 2,291,911 + -2.0 2,291,918 - +0.4 2,291,918 - +0.2 2,292,109 + +0.2 2,292,127 - -1.5 2,292,190 + -1.5 2,292,253 - Shewana3_1926 0.17 +0.2 2,292,527 + +0.8 2,292,665 - Shewana3_1927 0.32 -1.3 2,292,769 + Shewana3_1927 0.54 -1.7 2,293,173 + Shewana3_1928 0.27 +0.4 2,293,173 + Shewana3_1928 0.27 -1.2 2,293,173 + Shewana3_1928 0.27 +0.4 2,293,181 - Shewana3_1928 0.28 +0.9 2,293,233 + Shewana3_1928 0.38 +0.4 2,293,241 - Shewana3_1928 0.40 -3.5 2,293,277 + Shewana3_1928 0.47 +0.2 2,293,387 + Shewana3_1928 0.68 -1.4 2,293,488 + Shewana3_1928 0.88 +0.1 2,293,764 + -0.3
Or see this region's nucleotide sequence