Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1745 and Shewana3_1746 are separated by 29 nucleotides Shewana3_1746 and mnmA are separated by 3 nucleotides mnmA and Shewana3_1748 are separated by 221 nucleotides Shewana3_1748 and Shewana3_1749 are separated by 73 nucleotides
Shewana3_1745: Shewana3_1745 - adenylosuccinate lyase (RefSeq), at 2,058,797 to 2,060,167
_1745
Shewana3_1746: Shewana3_1746 - hypothetical protein (RefSeq), at 2,060,197 to 2,060,814
_1746
Shewana3_1747: mnmA - tRNA-specific 2-thiouridylase MnmA (RefSeq), at 2,060,818 to 2,061,936
mnmA
Shewana3_1748: Shewana3_1748 - NUDIX hydrolase (RefSeq), at 2,062,158 to 2,062,649
_1748
Shewana3_1749: Shewana3_1749 - ribosomal large subunit pseudouridine synthase E (RefSeq), at 2,062,723 to 2,063,532
_1749
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-1
0
1 at 2060.625 kb on - strand, within Shewana3_1746 at 2060.642 kb on - strand, within Shewana3_1746 at 2060.647 kb on - strand, within Shewana3_1746 at 2061.995 kb on - strand at 2062.212 kb on - strand, within Shewana3_1748 at 2062.240 kb on + strand, within Shewana3_1748 at 2062.348 kb on + strand, within Shewana3_1748 at 2062.348 kb on + strand, within Shewana3_1748 at 2062.496 kb on - strand, within Shewana3_1748 at 2062.598 kb on + strand, within Shewana3_1748 at 2062.678 kb on + strand at 2062.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,060,625 - Shewana3_1746 0.69 -0.7 2,060,642 - Shewana3_1746 0.72 -1.2 2,060,647 - Shewana3_1746 0.73 -0.2 2,061,995 - +1.4 2,062,212 - Shewana3_1748 0.11 +0.4 2,062,240 + Shewana3_1748 0.17 +0.4 2,062,348 + Shewana3_1748 0.39 -0.1 2,062,348 + Shewana3_1748 0.39 -0.0 2,062,496 - Shewana3_1748 0.69 +0.4 2,062,598 + Shewana3_1748 0.89 +0.9 2,062,678 + +1.0 2,062,793 + -0.2
Or see this region's nucleotide sequence