Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1732

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysB and Shewana3_1732 are separated by 81 nucleotidesShewana3_1732 and Shewana3_1733 are separated by 221 nucleotidesShewana3_1733 and Shewana3_1734 are separated by 150 nucleotides Shewana3_1731: cysB - transcriptional regulator CysB (RefSeq), at 2,039,604 to 2,040,578 cysB Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322 _1732 Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975 _1733 Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190 _1734 Position (kb) 2040 2041 2042Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2039.976 kb on + strand, within cysBat 2040.828 kb on + strand, within Shewana3_1732at 2040.846 kb on - strand, within Shewana3_1732at 2040.965 kb on - strand, within Shewana3_1732at 2041.079 kb on + strand, within Shewana3_1732at 2041.087 kb on - strand, within Shewana3_1732at 2041.179 kb on + strand, within Shewana3_1732at 2041.511 kb on - strandat 2041.680 kb on + strand, within Shewana3_1733at 2041.829 kb on + strand, within Shewana3_1733at 2041.847 kb on + strand, within Shewana3_1733at 2041.932 kb on - strandat 2041.990 kb on - strandat 2042.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,039,976 + cysB Shewana3_1731 0.38 -4.9
2,040,828 + Shewana3_1732 0.25 -6.8
2,040,846 - Shewana3_1732 0.28 -2.9
2,040,965 - Shewana3_1732 0.46 -2.8
2,041,079 + Shewana3_1732 0.63 -4.0
2,041,087 - Shewana3_1732 0.64 -5.5
2,041,179 + Shewana3_1732 0.78 -2.8
2,041,511 - -0.0
2,041,680 + Shewana3_1733 0.31 -0.4
2,041,829 + Shewana3_1733 0.66 +0.3
2,041,847 + Shewana3_1733 0.70 -2.8
2,041,932 - +0.6
2,041,990 - +0.1
2,042,168 - -1.1

Or see this region's nucleotide sequence