Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1441

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1439 and Shewana3_1440 are separated by 269 nucleotidesShewana3_1440 and Shewana3_1441 are separated by 34 nucleotidesShewana3_1441 and Shewana3_1442 are separated by 86 nucleotidesShewana3_1442 and Shewana3_1443 are separated by 40 nucleotides Shewana3_1439: Shewana3_1439 - hypothetical protein (RefSeq), at 1,668,865 to 1,669,182 _1439 Shewana3_1440: Shewana3_1440 - rhodanese domain-containing protein (RefSeq), at 1,669,452 to 1,669,811 _1440 Shewana3_1441: Shewana3_1441 - siroheme synthase (RefSeq), at 1,669,846 to 1,670,757 _1441 Shewana3_1442: Shewana3_1442 - YaeQ family protein (RefSeq), at 1,670,844 to 1,671,389 _1442 Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859 _1443 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1669.109 kb on + strand, within Shewana3_1439at 1669.332 kb on - strandat 1669.463 kb on - strandat 1669.489 kb on - strand, within Shewana3_1440at 1669.636 kb on + strand, within Shewana3_1440at 1669.995 kb on + strand, within Shewana3_1441at 1670.242 kb on - strand, within Shewana3_1441at 1670.320 kb on + strand, within Shewana3_1441at 1670.360 kb on - strand, within Shewana3_1441at 1670.801 kb on - strandat 1670.847 kb on - strandat 1671.275 kb on - strand, within Shewana3_1442at 1671.539 kb on + strandat 1671.661 kb on - strandat 1671.712 kb on + strand, within Shewana3_1443at 1671.712 kb on + strand, within Shewana3_1443

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,669,109 + Shewana3_1439 0.77 -1.4
1,669,332 - -1.3
1,669,463 - -2.2
1,669,489 - Shewana3_1440 0.10 +0.5
1,669,636 + Shewana3_1440 0.51 -0.1
1,669,995 + Shewana3_1441 0.16 -3.1
1,670,242 - Shewana3_1441 0.43 -4.2
1,670,320 + Shewana3_1441 0.52 -4.8
1,670,360 - Shewana3_1441 0.56 -4.1
1,670,801 - +0.2
1,670,847 - -1.0
1,671,275 - Shewana3_1442 0.79 -1.6
1,671,539 + -0.2
1,671,661 - +0.5
1,671,712 + Shewana3_1443 0.12 +0.3
1,671,712 + Shewana3_1443 0.12 +0.6

Or see this region's nucleotide sequence