Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1398 and Shewana3_1399 are separated by 198 nucleotides Shewana3_1399 and Shewana3_1400 are separated by 0 nucleotides Shewana3_1400 and Shewana3_1401 are separated by 94 nucleotides
Shewana3_1398: Shewana3_1398 - prolyl-tRNA synthetase (RefSeq), at 1,613,601 to 1,615,313
_1398
Shewana3_1399: Shewana3_1399 - hexapaptide repeat-containing transferase (RefSeq), at 1,615,512 to 1,616,141
_1399
Shewana3_1400: Shewana3_1400 - hypothetical protein (RefSeq), at 1,616,142 to 1,616,876
_1400
Shewana3_1401: Shewana3_1401 - putative lipoprotein (RefSeq), at 1,616,971 to 1,617,351
_1401
Position (kb)
1615
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1 at 1615.531 kb on + strand at 1615.599 kb on - strand, within Shewana3_1399 at 1615.687 kb on + strand, within Shewana3_1399 at 1615.701 kb on - strand, within Shewana3_1399 at 1615.771 kb on - strand, within Shewana3_1399 at 1616.074 kb on + strand, within Shewana3_1399 at 1616.356 kb on + strand, within Shewana3_1400 at 1616.709 kb on - strand, within Shewana3_1400 at 1616.831 kb on + strand at 1616.955 kb on + strand at 1616.963 kb on - strand at 1617.028 kb on + strand, within Shewana3_1401 at 1617.028 kb on + strand, within Shewana3_1401 at 1617.036 kb on - strand, within Shewana3_1401
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,615,531 + -0.5 1,615,599 - Shewana3_1399 0.14 -1.4 1,615,687 + Shewana3_1399 0.28 +0.3 1,615,701 - Shewana3_1399 0.30 +0.3 1,615,771 - Shewana3_1399 0.41 -0.2 1,616,074 + Shewana3_1399 0.89 +0.3 1,616,356 + Shewana3_1400 0.29 +0.8 1,616,709 - Shewana3_1400 0.77 +0.1 1,616,831 + -1.5 1,616,955 + +0.2 1,616,963 - -2.0 1,617,028 + Shewana3_1401 0.15 +0.2 1,617,028 + Shewana3_1401 0.15 -1.3 1,617,036 - Shewana3_1401 0.17 -2.0
Or see this region's nucleotide sequence