Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1189

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1188 and Shewana3_1189 overlap by 1 nucleotidesShewana3_1189 and Shewana3_1190 are separated by 169 nucleotidesShewana3_1190 and Shewana3_1191 are separated by 68 nucleotidesShewana3_1191 and Shewana3_1192 overlap by 1 nucleotides Shewana3_1188: Shewana3_1188 - putative oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 1,396,824 to 1,397,981 _1188 Shewana3_1189: Shewana3_1189 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq), at 1,397,981 to 1,398,598 _1189 Shewana3_1190: Shewana3_1190 - hypothetical protein (RefSeq), at 1,398,768 to 1,399,202 _1190 Shewana3_1191: Shewana3_1191 - hypothetical protein (RefSeq), at 1,399,271 to 1,399,561 _1191 Shewana3_1192: Shewana3_1192 - protein of unknown function YGGT (RefSeq), at 1,399,561 to 1,400,109 _1192 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -3 -2 -1 0 1at 1397.100 kb on - strand, within Shewana3_1188at 1397.100 kb on - strand, within Shewana3_1188at 1397.588 kb on + strand, within Shewana3_1188at 1397.650 kb on - strand, within Shewana3_1188at 1397.793 kb on + strand, within Shewana3_1188at 1397.914 kb on + strandat 1397.922 kb on - strandat 1398.032 kb on - strandat 1398.353 kb on - strand, within Shewana3_1189at 1398.493 kb on + strand, within Shewana3_1189at 1398.805 kb on + strandat 1399.097 kb on - strand, within Shewana3_1190at 1399.358 kb on + strand, within Shewana3_1191at 1399.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,397,100 - Shewana3_1188 0.24 +0.6
1,397,100 - Shewana3_1188 0.24 -1.7
1,397,588 + Shewana3_1188 0.66 +0.6
1,397,650 - Shewana3_1188 0.71 +0.4
1,397,793 + Shewana3_1188 0.84 +0.4
1,397,914 + +0.6
1,397,922 - +0.6
1,398,032 - +0.3
1,398,353 - Shewana3_1189 0.60 -0.1
1,398,493 + Shewana3_1189 0.83 -1.9
1,398,805 + +0.0
1,399,097 - Shewana3_1190 0.76 +0.2
1,399,358 + Shewana3_1191 0.30 +0.3
1,399,559 + -3.2

Or see this region's nucleotide sequence