Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0754 and Shewana3_0755 are separated by 117 nucleotides Shewana3_0755 and Shewana3_0756 are separated by 72 nucleotides Shewana3_0756 and Shewana3_0757 are separated by 41 nucleotides Shewana3_0757 and Shewana3_0758 are separated by 234 nucleotides
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Shewana3_0755: Shewana3_0755 - glutathione S-transferase domain-containing protein (RefSeq), at 876,942 to 877,571
_0755
Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144
_0756
Shewana3_0757: Shewana3_0757 - hypothetical protein (RefSeq), at 878,186 to 878,593
_0757
Shewana3_0758: Shewana3_0758 - hypothetical protein (RefSeq), at 878,828 to 879,613
_0758
Position (kb) 877
878
879 Strain fitness (log2 ratio) -1
0
1
2
3 at 877.040 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.329 kb on + strand, within Shewana3_0755 at 877.337 kb on - strand, within Shewana3_0755 at 877.565 kb on + strand at 877.751 kb on + strand, within Shewana3_0756 at 877.751 kb on + strand, within Shewana3_0756 at 877.814 kb on - strand, within Shewana3_0756 at 878.005 kb on - strand, within Shewana3_0756 at 878.526 kb on - strand, within Shewana3_0757 at 878.578 kb on + strand at 878.625 kb on + strand at 878.700 kb on + strand at 878.801 kb on - strand at 878.881 kb on + strand at 878.910 kb on - strand, within Shewana3_0758 at 878.915 kb on + strand, within Shewana3_0758 at 878.928 kb on - strand, within Shewana3_0758 at 879.124 kb on + strand, within Shewana3_0758
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 877,040 + Shewana3_0755 0.16 -0.1 877,319 + Shewana3_0755 0.60 +1.1 877,319 + Shewana3_0755 0.60 +0.3 877,327 - Shewana3_0755 0.61 +0.5 877,327 - Shewana3_0755 0.61 +0.1 877,329 + Shewana3_0755 0.61 +0.2 877,337 - Shewana3_0755 0.63 +0.3 877,565 + +0.4 877,751 + Shewana3_0756 0.21 -0.0 877,751 + Shewana3_0756 0.21 +0.4 877,814 - Shewana3_0756 0.34 -0.2 878,005 - Shewana3_0756 0.72 +0.4 878,526 - Shewana3_0757 0.83 +0.2 878,578 + +0.7 878,625 + +2.9 878,700 + +0.5 878,801 - -1.4 878,881 + -1.7 878,910 - Shewana3_0758 0.10 +0.2 878,915 + Shewana3_0758 0.11 +0.2 878,928 - Shewana3_0758 0.13 +1.2 879,124 + Shewana3_0758 0.38 +0.4
Or see this region's nucleotide sequence