Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0615 and Shewana3_0616 overlap by 20 nucleotides Shewana3_0616 and Shewana3_0617 are separated by 82 nucleotides Shewana3_0617 and Shewana3_0618 are separated by 422 nucleotides
Shewana3_0615: Shewana3_0615 - two component transcriptional regulator (RefSeq), at 721,146 to 721,820
_0615
Shewana3_0616: Shewana3_0616 - hypothetical protein (RefSeq), at 721,801 to 722,148
_0616
Shewana3_0617: Shewana3_0617 - cAMP-regulatory protein (RefSeq), at 722,231 to 722,866
_0617
Shewana3_0618: Shewana3_0618 - Sel1 domain-containing protein (RefSeq), at 723,289 to 724,068
_0618
Position (kb)
722
723 Strain fitness (log2 ratio)
-2
-1
0
1 at 721.231 kb on - strand, within Shewana3_0615 at 721.341 kb on - strand, within Shewana3_0615 at 721.436 kb on - strand, within Shewana3_0615 at 721.544 kb on + strand, within Shewana3_0615 at 721.559 kb on - strand, within Shewana3_0615 at 721.661 kb on + strand, within Shewana3_0615 at 721.683 kb on + strand, within Shewana3_0615 at 721.839 kb on + strand, within Shewana3_0616 at 721.852 kb on - strand, within Shewana3_0616 at 722.045 kb on + strand, within Shewana3_0616 at 722.231 kb on - strand at 722.711 kb on - strand, within Shewana3_0617 at 723.001 kb on - strand at 723.059 kb on + strand at 723.065 kb on + strand at 723.065 kb on + strand at 723.073 kb on + strand at 723.073 kb on + strand at 723.073 kb on + strand at 723.073 kb on - strand at 723.073 kb on - strand at 723.327 kb on - strand at 723.339 kb on + strand at 723.344 kb on + strand at 723.578 kb on + strand, within Shewana3_0618 at 723.641 kb on - strand, within Shewana3_0618 at 723.709 kb on + strand, within Shewana3_0618
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 721,231 - Shewana3_0615 0.13 +0.2 721,341 - Shewana3_0615 0.29 -1.6 721,436 - Shewana3_0615 0.43 +0.0 721,544 + Shewana3_0615 0.59 -1.8 721,559 - Shewana3_0615 0.61 +0.4 721,661 + Shewana3_0615 0.76 -0.3 721,683 + Shewana3_0615 0.80 -1.3 721,839 + Shewana3_0616 0.11 +0.2 721,852 - Shewana3_0616 0.15 +1.1 722,045 + Shewana3_0616 0.70 +0.2 722,231 - +0.5 722,711 - Shewana3_0617 0.75 -1.6 723,001 - +0.4 723,059 + +0.4 723,065 + -1.7 723,065 + -1.4 723,073 + +0.3 723,073 + +0.3 723,073 + +0.1 723,073 - +0.1 723,073 - -0.6 723,327 - -1.6 723,339 + +0.4 723,344 + -0.0 723,578 + Shewana3_0618 0.37 -1.9 723,641 - Shewana3_0618 0.45 +1.2 723,709 + Shewana3_0618 0.54 +0.3
Or see this region's nucleotide sequence