Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0165 and Shewana3_0166 overlap by 14 nucleotides Shewana3_0166 and Shewana3_0167 are separated by 234 nucleotides Shewana3_0167 and Shewana3_0168 are separated by 119 nucleotides
Shewana3_0165: Shewana3_0165 - hypothetical protein (RefSeq), at 188,999 to 190,165
_0165
Shewana3_0166: Shewana3_0166 - GCN5-related N-acetyltransferase (RefSeq), at 190,152 to 190,640
_0166
Shewana3_0167: Shewana3_0167 - phage tail collar domain-containing protein (RefSeq), at 190,875 to 191,510
_0167
Shewana3_0168: Shewana3_0168 - Ig family protein (RefSeq), at 191,630 to 202,264
_0168
Position (kb) 190
191 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 189.241 kb on + strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.347 kb on + strand, within Shewana3_0165 at 189.354 kb on - strand, within Shewana3_0165 at 189.366 kb on - strand, within Shewana3_0165 at 189.459 kb on + strand, within Shewana3_0165 at 189.469 kb on + strand, within Shewana3_0165 at 189.495 kb on + strand, within Shewana3_0165 at 189.517 kb on + strand, within Shewana3_0165 at 189.537 kb on - strand, within Shewana3_0165 at 189.577 kb on - strand, within Shewana3_0165 at 189.589 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.602 kb on - strand, within Shewana3_0165 at 189.678 kb on + strand, within Shewana3_0165 at 189.760 kb on + strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.770 kb on + strand, within Shewana3_0165 at 189.941 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.958 kb on - strand, within Shewana3_0165 at 190.005 kb on + strand, within Shewana3_0165 at 190.138 kb on - strand at 190.172 kb on - strand at 190.189 kb on + strand at 190.197 kb on - strand at 190.397 kb on + strand, within Shewana3_0166 at 190.478 kb on - strand, within Shewana3_0166 at 190.562 kb on + strand, within Shewana3_0166 at 190.836 kb on + strand at 190.970 kb on + strand, within Shewana3_0167 at 191.034 kb on + strand, within Shewana3_0167 at 191.053 kb on + strand, within Shewana3_0167 at 191.244 kb on - strand, within Shewana3_0167 at 191.287 kb on - strand, within Shewana3_0167 at 191.365 kb on - strand, within Shewana3_0167 at 191.373 kb on + strand, within Shewana3_0167 at 191.373 kb on + strand, within Shewana3_0167 at 191.378 kb on + strand, within Shewana3_0167 at 191.381 kb on - strand, within Shewana3_0167 at 191.391 kb on - strand, within Shewana3_0167 at 191.407 kb on + strand, within Shewana3_0167 at 191.416 kb on - strand, within Shewana3_0167 at 191.422 kb on + strand, within Shewana3_0167 at 191.613 kb on + strand at 191.613 kb on + strand at 191.613 kb on + strand at 191.613 kb on + strand at 191.621 kb on - strand at 191.621 kb on - strand at 191.621 kb on - strand at 191.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 189,241 + Shewana3_0165 0.21 -0.0 189,344 - Shewana3_0165 0.30 +0.3 189,344 - Shewana3_0165 0.30 +0.4 189,346 + Shewana3_0165 0.30 +0.2 189,346 + Shewana3_0165 0.30 -1.4 189,347 + Shewana3_0165 0.30 +0.5 189,354 - Shewana3_0165 0.30 -0.0 189,366 - Shewana3_0165 0.31 +1.7 189,459 + Shewana3_0165 0.39 +0.0 189,469 + Shewana3_0165 0.40 +0.1 189,495 + Shewana3_0165 0.43 -1.8 189,517 + Shewana3_0165 0.44 +0.9 189,537 - Shewana3_0165 0.46 +0.1 189,577 - Shewana3_0165 0.50 +0.3 189,589 + Shewana3_0165 0.51 +0.6 189,594 + Shewana3_0165 0.51 +0.0 189,594 + Shewana3_0165 0.51 +0.4 189,602 - Shewana3_0165 0.52 +0.5 189,678 + Shewana3_0165 0.58 +0.3 189,760 + Shewana3_0165 0.65 -1.9 189,768 - Shewana3_0165 0.66 -1.6 189,768 - Shewana3_0165 0.66 +0.3 189,770 + Shewana3_0165 0.66 +0.5 189,941 + Shewana3_0165 0.81 +0.2 189,950 + Shewana3_0165 0.81 +0.4 189,950 + Shewana3_0165 0.81 -1.0 189,958 - Shewana3_0165 0.82 -0.9 190,005 + Shewana3_0165 0.86 +0.9 190,138 - -1.3 190,172 - -0.9 190,189 + +0.2 190,197 - -1.6 190,397 + Shewana3_0166 0.50 -1.2 190,478 - Shewana3_0166 0.67 +0.9 190,562 + Shewana3_0166 0.84 -1.4 190,836 + -1.6 190,970 + Shewana3_0167 0.15 +0.3 191,034 + Shewana3_0167 0.25 -5.9 191,053 + Shewana3_0167 0.28 +2.6 191,244 - Shewana3_0167 0.58 -1.3 191,287 - Shewana3_0167 0.65 +0.3 191,365 - Shewana3_0167 0.77 -0.5 191,373 + Shewana3_0167 0.78 +0.6 191,373 + Shewana3_0167 0.78 +0.5 191,378 + Shewana3_0167 0.79 +0.6 191,381 - Shewana3_0167 0.80 -0.6 191,391 - Shewana3_0167 0.81 +0.5 191,407 + Shewana3_0167 0.84 -0.0 191,416 - Shewana3_0167 0.85 -0.4 191,422 + Shewana3_0167 0.86 +0.6 191,613 + +0.3 191,613 + +0.4 191,613 + +0.4 191,613 + +0.2 191,621 - +0.9 191,621 - +1.9 191,621 - +0.5 191,634 - +0.4
Or see this region's nucleotide sequence