Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0083 and Shewana3_0084 are separated by 20 nucleotides Shewana3_0084 and Shewana3_0085 are separated by 59 nucleotides Shewana3_0085 and Shewana3_0086 are separated by 160 nucleotides Shewana3_0086 and Shewana3_0087 are separated by 71 nucleotides Shewana3_0087 and Shewana3_0088 are separated by 15 nucleotides
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Shewana3_0084: Shewana3_0084 - hypothetical protein (RefSeq), at 98,109 to 98,372
_0084
Shewana3_0085: Shewana3_0085 - thioesterase superfamily protein (RefSeq), at 98,432 to 98,896
_0085
Shewana3_0086: Shewana3_0086 - MerR family transcriptional regulator (RefSeq), at 99,057 to 99,410
_0086
Shewana3_0087: Shewana3_0087 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 99,482 to 100,060
_0087
Shewana3_0088: Shewana3_0088 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 100,076 to 100,471
_0088
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1 at 98.072 kb on - strand at 98.175 kb on + strand, within Shewana3_0084 at 98.175 kb on + strand, within Shewana3_0084 at 98.504 kb on - strand, within Shewana3_0085 at 98.507 kb on + strand, within Shewana3_0085 at 98.586 kb on - strand, within Shewana3_0085 at 98.694 kb on + strand, within Shewana3_0085 at 98.830 kb on + strand, within Shewana3_0085 at 98.832 kb on + strand, within Shewana3_0085 at 98.837 kb on - strand, within Shewana3_0085 at 98.840 kb on - strand, within Shewana3_0085 at 98.990 kb on + strand at 99.008 kb on - strand at 99.126 kb on + strand, within Shewana3_0086 at 99.189 kb on - strand, within Shewana3_0086 at 99.267 kb on - strand, within Shewana3_0086 at 99.288 kb on + strand, within Shewana3_0086 at 99.449 kb on - strand at 99.449 kb on - strand at 99.751 kb on + strand, within Shewana3_0087 at 99.817 kb on - strand, within Shewana3_0087 at 100.097 kb on + strand at 100.153 kb on - strand, within Shewana3_0088 at 100.153 kb on - strand, within Shewana3_0088 at 100.170 kb on - strand, within Shewana3_0088 at 100.219 kb on + strand, within Shewana3_0088
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 98,072 - +0.4 98,175 + Shewana3_0084 0.25 +0.6 98,175 + Shewana3_0084 0.25 +0.5 98,504 - Shewana3_0085 0.15 +0.3 98,507 + Shewana3_0085 0.16 +0.8 98,586 - Shewana3_0085 0.33 +0.7 98,694 + Shewana3_0085 0.56 +0.2 98,830 + Shewana3_0085 0.86 +0.7 98,832 + Shewana3_0085 0.86 -2.2 98,837 - Shewana3_0085 0.87 -1.8 98,840 - Shewana3_0085 0.88 +0.4 98,990 + -0.5 99,008 - +0.1 99,126 + Shewana3_0086 0.19 +0.4 99,189 - Shewana3_0086 0.37 +0.2 99,267 - Shewana3_0086 0.59 +0.6 99,288 + Shewana3_0086 0.65 -1.2 99,449 - +0.2 99,449 - -1.6 99,751 + Shewana3_0087 0.46 -1.3 99,817 - Shewana3_0087 0.58 -2.2 100,097 + -1.4 100,153 - Shewana3_0088 0.19 +0.5 100,153 - Shewana3_0088 0.19 +0.9 100,170 - Shewana3_0088 0.24 -1.2 100,219 + Shewana3_0088 0.36 +0.5
Or see this region's nucleotide sequence