Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4350 and Shewana3_4351 overlap by 4 nucleotides Shewana3_4351 and Shewana3_4352 are separated by 80 nucleotides
Shewana3_4350: Shewana3_4350 - hypothetical protein (RefSeq), at 234,373 to 235,905
_4350
Shewana3_4351: Shewana3_4351 - patatin (RefSeq), at 235,902 to 236,840
_4351
Shewana3_4352: Shewana3_4352 - hypothetical protein (RefSeq), at 236,921 to 238,486
_4352
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 234.972 kb on + strand, within Shewana3_4350 at 234.973 kb on - strand, within Shewana3_4350 at 234.979 kb on - strand, within Shewana3_4350 at 234.980 kb on - strand, within Shewana3_4350 at 235.002 kb on + strand, within Shewana3_4350 at 235.069 kb on + strand, within Shewana3_4350 at 235.082 kb on + strand, within Shewana3_4350 at 235.083 kb on - strand, within Shewana3_4350 at 235.105 kb on + strand, within Shewana3_4350 at 235.209 kb on - strand, within Shewana3_4350 at 235.225 kb on - strand, within Shewana3_4350 at 235.243 kb on - strand, within Shewana3_4350 at 235.250 kb on + strand, within Shewana3_4350 at 235.258 kb on - strand, within Shewana3_4350 at 235.341 kb on + strand, within Shewana3_4350 at 235.489 kb on + strand, within Shewana3_4350 at 235.489 kb on - strand, within Shewana3_4350 at 235.497 kb on - strand, within Shewana3_4350 at 235.499 kb on - strand, within Shewana3_4350 at 235.501 kb on + strand, within Shewana3_4350 at 235.514 kb on + strand, within Shewana3_4350 at 235.536 kb on - strand, within Shewana3_4350 at 235.546 kb on - strand, within Shewana3_4350 at 235.627 kb on + strand, within Shewana3_4350 at 235.627 kb on + strand, within Shewana3_4350 at 235.627 kb on + strand, within Shewana3_4350 at 235.631 kb on + strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.635 kb on - strand, within Shewana3_4350 at 235.663 kb on + strand, within Shewana3_4350 at 235.663 kb on + strand, within Shewana3_4350 at 235.743 kb on + strand, within Shewana3_4350 at 235.743 kb on - strand, within Shewana3_4350 at 235.744 kb on + strand, within Shewana3_4350 at 235.752 kb on - strand at 235.752 kb on - strand at 235.752 kb on - strand at 236.133 kb on + strand, within Shewana3_4351 at 236.134 kb on + strand, within Shewana3_4351 at 236.161 kb on + strand, within Shewana3_4351 at 236.176 kb on - strand, within Shewana3_4351 at 236.176 kb on - strand, within Shewana3_4351 at 236.198 kb on - strand, within Shewana3_4351 at 236.268 kb on + strand, within Shewana3_4351 at 236.382 kb on - strand, within Shewana3_4351 at 236.469 kb on + strand, within Shewana3_4351 at 236.495 kb on + strand, within Shewana3_4351 at 236.554 kb on + strand, within Shewana3_4351 at 236.788 kb on + strand at 236.788 kb on + strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.796 kb on - strand at 236.797 kb on - strand at 236.978 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 237.035 kb on + strand at 237.188 kb on - strand, within Shewana3_4352 at 237.221 kb on + strand, within Shewana3_4352 at 237.229 kb on - strand, within Shewana3_4352 at 237.258 kb on - strand, within Shewana3_4352 at 237.424 kb on + strand at 237.432 kb on - strand, within Shewana3_4352 at 237.770 kb on + strand, within Shewana3_4352 at 237.775 kb on + strand, within Shewana3_4352
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 234,972 + Shewana3_4350 0.39 +1.3 234,973 - Shewana3_4350 0.39 -1.5 234,979 - Shewana3_4350 0.40 +2.4 234,980 - Shewana3_4350 0.40 -1.5 235,002 + Shewana3_4350 0.41 -1.4 235,069 + Shewana3_4350 0.45 -0.5 235,082 + Shewana3_4350 0.46 +0.9 235,083 - Shewana3_4350 0.46 -0.4 235,105 + Shewana3_4350 0.48 +1.4 235,209 - Shewana3_4350 0.55 -0.2 235,225 - Shewana3_4350 0.56 -2.2 235,243 - Shewana3_4350 0.57 +0.6 235,250 + Shewana3_4350 0.57 +0.8 235,258 - Shewana3_4350 0.58 +0.2 235,341 + Shewana3_4350 0.63 -0.7 235,489 + Shewana3_4350 0.73 -0.2 235,489 - Shewana3_4350 0.73 +1.1 235,497 - Shewana3_4350 0.73 -0.2 235,499 - Shewana3_4350 0.73 +0.0 235,501 + Shewana3_4350 0.74 -1.8 235,514 + Shewana3_4350 0.74 -0.2 235,536 - Shewana3_4350 0.76 -1.8 235,546 - Shewana3_4350 0.77 -0.0 235,627 + Shewana3_4350 0.82 -2.1 235,627 + Shewana3_4350 0.82 -0.4 235,627 + Shewana3_4350 0.82 +0.6 235,631 + Shewana3_4350 0.82 +0.8 235,635 - Shewana3_4350 0.82 +0.0 235,635 - Shewana3_4350 0.82 +0.3 235,635 - Shewana3_4350 0.82 +0.5 235,635 - Shewana3_4350 0.82 -1.6 235,663 + Shewana3_4350 0.84 -1.6 235,663 + Shewana3_4350 0.84 -1.0 235,743 + Shewana3_4350 0.89 -0.4 235,743 - Shewana3_4350 0.89 +0.6 235,744 + Shewana3_4350 0.89 +0.2 235,752 - +0.4 235,752 - -2.1 235,752 - +0.5 236,133 + Shewana3_4351 0.25 +0.9 236,134 + Shewana3_4351 0.25 -0.8 236,161 + Shewana3_4351 0.28 +0.0 236,176 - Shewana3_4351 0.29 -0.5 236,176 - Shewana3_4351 0.29 +0.6 236,198 - Shewana3_4351 0.32 -2.7 236,268 + Shewana3_4351 0.39 -1.4 236,382 - Shewana3_4351 0.51 +0.8 236,469 + Shewana3_4351 0.60 -1.8 236,495 + Shewana3_4351 0.63 +2.3 236,554 + Shewana3_4351 0.69 +0.3 236,788 + +1.5 236,788 + +0.6 236,796 - +0.2 236,796 - +0.0 236,796 - +0.3 236,796 - +0.1 236,796 - -1.3 236,797 - +0.7 236,978 - +0.5 236,979 - +0.3 236,979 - +0.8 236,979 - -3.0 237,035 + -1.3 237,188 - Shewana3_4352 0.17 +1.0 237,221 + Shewana3_4352 0.19 +1.1 237,229 - Shewana3_4352 0.20 -2.1 237,258 - Shewana3_4352 0.22 -0.9 237,424 + -0.6 237,432 - Shewana3_4352 0.33 +0.8 237,770 + Shewana3_4352 0.54 +0.6 237,775 + Shewana3_4352 0.55 -2.9
Or see this region's nucleotide sequence