Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4345 and Shewana3_4346 are separated by 17 nucleotides Shewana3_4346 and Shewana3_4347 overlap by 4 nucleotides Shewana3_4347 and Shewana3_4348 are separated by 65 nucleotides Shewana3_4348 and Shewana3_4349 are separated by 178 nucleotides
Shewana3_4345: Shewana3_4345 - putative mercuric reductase (RefSeq), at 230,394 to 232,079
_4345
Shewana3_4346: Shewana3_4346 - transcriptional regulator MerD (RefSeq), at 232,097 to 232,462
_4346
Shewana3_4347: Shewana3_4347 - putative mercury resistance protein (RefSeq), at 232,459 to 232,695
_4347
Shewana3_4348: Shewana3_4348 - hypothetical protein (RefSeq), at 232,761 to 232,973
_4348
Shewana3_4349: Shewana3_4349 - umuC protein (RefSeq), at 233,152 to 233,817
_4349
Position (kb) 232
233 Strain fitness (log2 ratio) -2
-1
0
1 at 231.602 kb on - strand, within Shewana3_4345 at 231.602 kb on - strand, within Shewana3_4345 at 231.751 kb on - strand, within Shewana3_4345 at 231.754 kb on - strand, within Shewana3_4345 at 232.104 kb on + strand at 232.439 kb on - strand at 232.464 kb on - strand at 232.616 kb on - strand, within Shewana3_4347 at 232.651 kb on - strand, within Shewana3_4347 at 232.732 kb on - strand at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.987 kb on - strand at 233.069 kb on - strand at 233.084 kb on - strand at 233.194 kb on + strand at 233.391 kb on + strand, within Shewana3_4349 at 233.563 kb on + strand, within Shewana3_4349 at 233.571 kb on - strand, within Shewana3_4349 at 233.571 kb on - strand, within Shewana3_4349
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 231,602 - Shewana3_4345 0.72 +0.7 231,602 - Shewana3_4345 0.72 -0.4 231,751 - Shewana3_4345 0.80 +0.8 231,754 - Shewana3_4345 0.81 -2.5 232,104 + +0.3 232,439 - -0.1 232,464 - +0.1 232,616 - Shewana3_4347 0.66 +0.2 232,651 - Shewana3_4347 0.81 -2.0 232,732 - -1.8 232,910 + Shewana3_4348 0.70 +0.4 232,910 + Shewana3_4348 0.70 +0.4 232,910 + Shewana3_4348 0.70 +0.4 232,987 - +0.6 233,069 - +0.9 233,084 - -2.0 233,194 + +0.6 233,391 + Shewana3_4349 0.36 +0.5 233,563 + Shewana3_4349 0.62 +0.4 233,571 - Shewana3_4349 0.63 +0.3 233,571 - Shewana3_4349 0.63 +0.2
Or see this region's nucleotide sequence